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Os11g0703100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thaumatin, pathogenesis-related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.022) R2 : 0.851
β1 : -0.874 (0.0806) R2dD : 0.0398 R2D : 0.0305
β2 : 2.86 (0.0573) R2dC : 0.823 R2C : 0.812
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.102 (0.047) R2dN8 : 0.00204 R2N8 : -0.00754
σ : 0.414
deviance : 78.18
__
_____
C
peak time of C : 6.78
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.67 0.366 10.8 -1.35 3.05 1.11 0.206 -1.57 -0.353 6.33 20.8 11 -- --
62.75 0.372 10.8 -1.09 3.04 1.03 0.333 -- -0.272 6.34 20.32 9 -- --
60.76 0.363 10.8 -1.35 3.05 1.11 -- -1.58 -0.355 6.33 20.8 10 -- --
63.02 0.372 10.8 -1.08 3.04 1.01 -- -- -0.271 6.35 20.32 9 -- --
401.59 0.933 10.8 -0.211 -- -1.56 -- 1.15 0.122 -- 25.11 525 -- --
78.15 0.414 10.7 -0.876 2.86 -- 0.103 -- -0.101 6.78 -- -- -- --
78.18 0.414 10.7 -0.874 2.86 -- -- -- -0.102 6.78 -- -- -- --
396.5 0.927 10.7 -0.464 -- -1.93 -- -- 0.116 -- 24.85 493 -- --
91.7 0.448 10.7 -- 2.96 0.646 -- -- -0.0975 6.52 20.32 9 -- --
507.41 1.05 10.8 -0.81 -- -- -- -- -0.0457 -- -- -- -- --
98.32 0.464 10.7 -- 2.85 -- -- -- -0.00419 6.8 -- -- -- --
402.07 0.934 10.7 -- -- -2.03 -- -- 0.173 -- 24.7 492 -- --
524.72 1.07 10.8 -- -- -- -- -- 0.0441 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.73 temperature 10 90 > th dose dependent rect. 11 13
3 55.83 temperature 10 270 > th dose dependent rect. 17 22
5 57.26 temperature 10 270 > th dose dependent rect. 9 13
6 57.39 temperature 30 10 < th dose dependent rect. 7 13
8 57.50 temperature 15 10 > th dose dependent rect. 11 13
16 57.99 temperature 20 10 > th dose dependent rect. 10 23
19 58.11 temperature 20 10 > th dose dependent rect. 19 23
25 58.37 temperature 20 90 > th dose dependent rect. 10 23
30 58.73 temperature 20 10 > th dose dependent rect. 11 20
39 59.09 temperature 20 90 > th dose dependent rect. 10 21
55 59.58 temperature 10 720 > th dose dependent rect. 10 4
57 59.65 temperature 20 10 > th dose dependent rect. 4 20
58 59.72 wind 9 43200 > th dose dependent rect. 18 3
62 59.78 wind 9 43200 > th dose independent rect. 18 3
91 60.25 temperature 10 270 > th dose dependent rect. 2 12
94 60.30 temperature 20 10 > th dose dependent rect. 8 23
113 60.47 wind 9 43200 > th dose dependent rect. 18 12
115 60.48 temperature 30 270 < th dose dependent rect. 22 22
123 60.61 wind 9 43200 < th dose independent rect. 18 3
137 60.82 temperature 30 90 < th dose dependent rect. 14 21
139 60.86 wind 9 43200 > th dose dependent rect. 18 7
147 60.94 temperature 30 10 < th dose dependent rect. 15 5
162 61.01 temperature 20 10 > th dose dependent no NA NA
179 61.23 temperature 30 90 < th dose dependent rect. 15 4
212 61.50 temperature 30 270 < th dose independent rect. 15 2
225 61.59 temperature 10 720 > th dose dependent rect. 10 21
235 61.67 temperature 30 10 < th dose dependent rect. 15 20
238 61.70 temperature 10 270 > th dose dependent rect. 8 23
241 61.74 wind 9 43200 > th dose independent rect. 18 7
242 61.74 temperature 15 720 > th dose dependent rect. 11 2
265 61.90 wind 9 43200 > th dose independent rect. 18 10
270 61.92 temperature 20 10 > th dose dependent sin 21 NA
272 61.93 wind 9 43200 > th dose independent rect. 18 12
330 62.25 temperature 10 270 > th dose dependent rect. 1 23
331 62.25 temperature 30 10 < th dose dependent rect. 7 23
372 62.49 temperature 20 10 > th dose dependent rect. 17 23
376 62.51 temperature 30 90 < th dose dependent rect. 17 2
379 62.51 temperature 20 10 > th dose dependent rect. 23 23
394 62.60 temperature 10 720 > th dose dependent rect. 2 20
407 62.67 wind 9 43200 < th dose independent rect. 18 7
408 62.67 temperature 10 10 > th dose dependent sin 20 NA
417 62.71 temperature 30 720 < th dose independent rect. 7 3
418 62.71 temperature 30 270 < th dose independent rect. 13 21
427 62.74 temperature 20 10 > th dose dependent rect. 6 23
449 62.85 temperature 30 90 < th dose independent rect. 7 13
475 62.94 wind 9 43200 < th dose independent rect. 18 10
477 62.94 radiation 1 43200 < th dose dependent rect. 21 4
492 62.97 temperature 10 720 > th dose dependent rect. 2 5
496 62.97 temperature 30 10 < th dose dependent rect. 24 20
506 62.98 temperature 30 10 < th dose dependent rect. 12 23
507 62.99 temperature 10 10 > th dose dependent no NA NA
508 62.99 temperature 30 10 < th dose dependent rect. 12 8
512 63.01 wind 9 43200 < th dose independent rect. 18 12
518 63.03 wind 5 43200 > th dose independent rect. 13 9
560 63.14 temperature 30 270 < th dose independent rect. 5 13
568 63.16 atmosphere 1010 43200 < th dose dependent rect. 7 1
582 63.20 temperature 30 270 < th dose independent rect. 14 19
583 63.20 temperature 20 720 > th dose dependent rect. 4 1
584 63.20 wind 5 43200 > th dose dependent rect. 15 6
599 63.24 wind 5 43200 < th dose independent rect. 13 9
602 63.24 temperature 30 10 < th dose dependent sin 20 NA
618 63.28 wind 5 43200 < th dose independent rect. 13 12
640 63.33 wind 5 43200 > th dose independent sin 18 NA
641 63.33 wind 5 43200 < th dose independent rect. 11 11
656 63.36 wind 7 43200 < th dose independent rect. 15 1
675 63.39 wind 7 43200 < th dose independent rect. 15 6
706 63.45 wind 5 43200 < th dose independent sin 18 NA
734 63.49 atmosphere 1005 270 > th dose dependent rect. 15 3
762 63.53 wind 7 43200 > th dose independent rect. 15 1
790 63.57 atmosphere 1005 43200 > th dose independent rect. 6 1
799 63.58 temperature 25 1440 < th dose independent rect. 9 4
804 63.58 temperature 25 10 > th dose independent rect. 19 23
807 63.58 atmosphere 1005 270 > th dose dependent rect. 14 5
814 63.59 wind 5 43200 > th dose dependent rect. 14 11
834 63.62 temperature 25 1440 < th dose independent rect. 1 17
923 63.72 temperature 10 720 > th dose dependent rect. 19 12
975 63.78 atmosphere 1005 43200 < th dose independent rect. 5 1
976 63.78 wind 5 43200 < th dose independent rect. 11 7
982 63.79 wind 5 43200 > th dose independent rect. 13 5
1000 63.81 atmosphere 1005 43200 < th dose independent rect. 2 6