BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0703100 Os11g0703100|J100071A15
(206 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36010.1 | chr4:17039472-17040976 REVERSE LENGTH=302 57 5e-09
AT1G73620.1 | chr1:27681432-27682954 FORWARD LENGTH=265 54 8e-08
AT1G77700.1 | chr1:29204747-29206217 FORWARD LENGTH=357 53 9e-08
AT1G18250.2 | chr1:6277024-6278005 REVERSE LENGTH=245 52 2e-07
AT4G24180.1 | chr4:12550356-12551221 REVERSE LENGTH=261 52 2e-07
AT2G17860.1 | chr2:7762257-7763018 REVERSE LENGTH=254 52 2e-07
AT1G75050.1 | chr1:28180116-28181062 FORWARD LENGTH=247 52 2e-07
>AT4G36010.1 | chr4:17039472-17040976 REVERSE LENGTH=302
Length = 301
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 82/232 (35%), Gaps = 59/232 (25%)
Query: 28 FTMHNLCPYTVWPLVTPNAGQPAIITGGATIRLDPNGLASLAFPAAAGWSGRVVPRXXXX 87
FT+ N C YTVWP + AG + T G L+P + PAA WSGR+ R
Sbjct: 25 FTIVNQCSYTVWPGLLSGAGTSPLPTTG--FSLNPTETRVIPIPAA--WSGRIWGRTLCT 80
Query: 88 XXXXXXXXXXXX------------------XXVAQVSVNAAGGLAEYSVSLVDGFNVPAT 129
+A+ ++N A GL Y VSLVDG+N+P T
Sbjct: 81 QDATTGRFTCITGDCGSSTVECSGSGAAPPATLAEFTLNGANGLDFYDVSLVDGYNIPMT 140
Query: 130 ITPH----AFDGSQTCPVLGXXXXXXXXXXXXXRV------GAGCRAS------------ 167
I P A + C G +V G C+++
Sbjct: 141 IVPQGGGDAGGVAGNCTTTGCVAELNGPCPAQLKVATTGAEGVACKSACEAFGTPEYCCS 200
Query: 168 --------------PQFFKEMCPEARTTATDVEATPQKCFGPGELKVVFCPT 205
QFFK CP A + A D + C G + + FCP+
Sbjct: 201 GAFGTPDTCKPSEYSQFFKNACPRAYSYAYDDGTSTFTC-GGADYVITFCPS 251
>AT1G73620.1 | chr1:27681432-27682954 FORWARD LENGTH=265
Length = 264
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 30 MHNLCPYTVWPLVTPNAGQPAIITGGATIRLDPNGLASLAFPAAAGWSGRVVPRXXXXXX 89
+N C YTVWP + P++GQ + GG +L PN +L P WSGR R
Sbjct: 46 FYNKCTYTVWPGIQPSSGQSLLAGGG--FKLSPNRAYTLQLPPL--WSGRFWGRHGCSFD 101
Query: 90 XXXXXXXXXXXXVAQVSVNAAGG-----LAE---------YSVSLVDGFNVPATITP 132
N AGG LAE Y VSLVDG+N+ +I P
Sbjct: 102 RSGRGRCATGDCGGSFLCNGAGGVPPATLAEITLGHDMDFYDVSLVDGYNLAMSIMP 158
>AT1G77700.1 | chr1:29204747-29206217 FORWARD LENGTH=357
Length = 356
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 28 FTMHNLCPYTVWPLVTPNAGQPAIITGGATIRLDPNGLASLAFPAAAGWSGRVVPRXXXX 87
FT+ N C T+WP +TP G L P S+ F A GWSGR+ R
Sbjct: 91 FTIINSCDQTIWPAITPGEN-----FNGGGFELKPG--QSIVFHAPVGWSGRIWGRTGCK 143
Query: 88 XXXXXXXXXXXXXXVAQVSVNAAG----GLAE--------YSVSLVDGFNVPATITPHAF 135
+ + +A+G LAE Y VSLVDGFN+P ++TP
Sbjct: 144 FDSTGTGTCETGSCGSTLKCSASGKPPASLAEFTLAALDFYDVSLVDGFNLPMSVTP--M 201
Query: 136 DGSQTCPVLG 145
+G C V G
Sbjct: 202 NGKGNCSVAG 211
>AT1G18250.2 | chr1:6277024-6278005 REVERSE LENGTH=245
Length = 244
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 76/222 (34%), Gaps = 50/222 (22%)
Query: 30 MHNLCPYTVWPLVTPNAGQPAIITGGATIRLDPNGLASLAFPAAAGWSGRVVPRXXXXXX 89
+N C + VWP + P+AGQ + GG +L N SL P WSGR R
Sbjct: 26 FYNKCKHPVWPGIQPSAGQNLLAGGG--FKLPANKAHSLQLPPL--WSGRFWGRHGCTFD 81
Query: 90 XXXXXXXXXXXXVAQVSVNAAGG-----LAE---------YSVSLVDGFNVPATITPHAF 135
+S N AGG LAE Y VSLVDG+N+ +I P
Sbjct: 82 RSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLGPELDFYDVSLVDGYNLAMSIMPVKG 141
Query: 136 DG-----------SQTCPVLGXXXXXXXXXXXXXRVGAGCRASPQF-------------- 170
G +Q CPV + SPQ+
Sbjct: 142 SGQCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKP 201
Query: 171 ------FKEMCPEARTTATDVEATPQKCFGPGELKVVFCPTN 206
FK CP+A + A D + C V FCP +
Sbjct: 202 TAYSKIFKVACPKAYSYAYDDPTSIATC-SKANYIVTFCPHH 242
>AT4G24180.1 | chr4:12550356-12551221 REVERSE LENGTH=261
Length = 260
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 83/229 (36%), Gaps = 59/229 (25%)
Query: 29 TMHNLCPYTVWPLVTPNAGQPAIITGGATIRLDPNGLASLAFPAAAGWSGRVVPRXXXXX 88
T+ N C +TVWP + N+G I T G L P G S +F A A WSGR R
Sbjct: 36 TIVNRCSFTVWPGILSNSGSGDIGTTG--FELVPGG--SRSFQAPASWSGRFWARTGCNF 91
Query: 89 XXXXXXXXXXXXXVA--QVSVNAAGG-----LAE----------------YSVSLVDGFN 125
QV N AG LAE Y VSLVDG+N
Sbjct: 92 NSDTGQGTCLTGDCGSNQVECNGAGAKPPATLAEFTIGSGPADPARKQDFYDVSLVDGYN 151
Query: 126 VPATITPHAFDGSQ-TCPVLGXXXXXXXXXXXXXRVGAG------CRA--SPQF------ 170
VP + A GS+ TC G R G+G C A SP++
Sbjct: 152 VPMLV--EASGGSEGTCLTTGCVTDLNQKCPTELRFGSGSACKSACEAFGSPEYCCSGAY 209
Query: 171 --------------FKEMCPEARTTATDVEATPQKCFGPGELKVVFCPT 205
FK CP + + A D +AT + + FCP+
Sbjct: 210 ASPTECKPSMYSEIFKSACPRSYSYAFD-DATSTFTCTDADYTITFCPS 257
>AT2G17860.1 | chr2:7762257-7763018 REVERSE LENGTH=254
Length = 253
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 28 FTMHNLCPYTVWPLVTPNAGQPAIITGGATIRLDPNGLASLAFPAAAGWSGRVVPRXXXX 87
FT+ N C YTVWP + AG + T G ++ + L S+ PAA WSGR+ R
Sbjct: 25 FTIVNQCNYTVWPGLLSGAGTAPLPTTGFSLNSFESRLISI--PAA--WSGRIWGRTLCN 80
Query: 88 XXXXXXXXXXXX------------------XXVAQVSVNAAGGLAEYSVSLVDGFNVPAT 129
+A+ ++N A L Y VSLVDG+N+P T
Sbjct: 81 QNEITGIFTCVTGDCGSSQIECSGAGAIPPATLAEFTLNGAENLDFYDVSLVDGYNIPMT 140
Query: 130 ITPH 133
I P+
Sbjct: 141 IVPY 144
>AT1G75050.1 | chr1:28180116-28181062 FORWARD LENGTH=247
Length = 246
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 76/226 (33%), Gaps = 56/226 (24%)
Query: 28 FTMHNLCPYTVWPLVTPNAGQPAIITGGATIRLDPNGLASLAFPAAAGWSGRVVPRXXXX 87
FT+ N CPYTVWP + +G + G L P AS+ A AGWSGR R
Sbjct: 27 FTLQNSCPYTVWPGIL--SGNDNTL-GDGGFPLTPG--ASVQLTAPAGWSGRFWARTGCN 81
Query: 88 XXXXXXXXXXXXX---------------XVAQVSVNAAGGLAEYSVSLVDGFNVPATITP 132
+A+ ++ GG Y VSLVDG+NV I P
Sbjct: 82 FDASGHGNCGTGDCGGVLKCNGGGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVEMGIKP 141
Query: 133 HAFDGSQTCPVLGXXXXXXXXXXXXXRV------------------------GAGCRASP 168
GS C G R+ G A+P
Sbjct: 142 QG--GSGDCHYAGCVADVNAVCPNELRLMDPHTGIIAACKSACAAFNSEEFCCTGAHATP 199
Query: 169 Q---------FFKEMCPEARTTATDVEATPQKCFGPGELKVVFCPT 205
Q FK CP A + A D + C G L + FCPT
Sbjct: 200 QTCSPTHYSAMFKSACPGAYSYAYDDATSTFTCTGSNYL-ISFCPT 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,326,667
Number of extensions: 99754
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 7
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)