Os01g0839900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thaumatin, pathogenesis-related family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0839900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Thaumatin, pathogenesis-related family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 738.12 | 1.28 | 6.7 | 0.822 | 4.58 | 1.98 | -1.29 | -0.549 | -0.407 | 10.8 | 20 | 1317 | 5.88 | 0.632 |
| 739.74 | 1.27 | 6.71 | 0.646 | 4.58 | 2.01 | -1.28 | -- | -0.42 | 10.8 | 19.93 | 1316 | 5.88 | 0.633 |
| 745.04 | 1.27 | 6.7 | 0.778 | 4.58 | 1.98 | -- | -0.559 | -0.41 | 10.8 | 20 | 1315 | 5.88 | 0.617 |
| 746.57 | 1.27 | 6.73 | 0.59 | 4.58 | 2 | -- | -- | -0.447 | 10.8 | 19.99 | 1314 | 5.88 | 0.625 |
| 1852 | 2 | 6.79 | 0.292 | -- | 3.08 | -- | -1.14 | -0.227 | -- | 19.76 | 1819 | 6.11 | 0.07 |
| 971.23 | 1.46 | 6.86 | -0.0323 | 4.62 | -- | -1.25 | -- | -1.05 | 11 | -- | -- | -- | -- |
| 977.79 | 1.46 | 6.86 | -0.0832 | 4.63 | -- | -- | -- | -1.05 | 11 | -- | -- | -- | -- |
| 1151.48 | 1.58 | 7.01 | -0.571 | -- | 3.16 | -- | -- | -0.967 | -- | 32.57 | 2027 | 6.12 | 0.968 |
| 755.49 | 1.28 | 6.72 | -- | 4.59 | 1.94 | -- | -- | -0.449 | 10.8 | 19.91 | 1314 | 5.88 | 0.617 |
| 2309.13 | 2.25 | 6.98 | -0.185 | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
| 977.98 | 1.46 | 6.86 | -- | 4.63 | -- | -- | -- | -1.04 | 11 | -- | -- | -- | -- |
| 950.07 | 1.44 | 7 | -- | -- | 3.63 | -- | -- | -1.27 | -- | 36.24 | 2086 | 4.52 | 2.25 |
| 2310.04 | 2.24 | 6.97 | -- | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 732.74 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 3 | 736.83 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 6 | 738.42 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 8 | 743.72 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 15 | 744.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 16 | 745.42 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 19 | 746.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 82 | 753.66 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 100 | 754.79 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 107 | 755.43 | wind | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 113 | 755.98 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 133 | 758.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 139 | 759.08 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 141 | 759.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 150 | 760.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 163 | 762.17 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 195 | 764.59 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 196 | 764.67 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 204 | 765.19 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 226 | 766.23 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 235 | 766.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 240 | 766.79 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 241 | 766.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 244 | 766.99 | humidity | 70 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 248 | 767.13 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 270 | 768.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 278 | 768.35 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 290 | 768.61 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 292 | 768.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 315 | 769.49 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 323 | 769.78 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 19 |
| 331 | 769.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 353 | 770.45 | wind | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 354 | 770.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 371 | 771.03 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 392 | 771.35 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 417 | 772.01 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 499 | 773.70 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 516 | 774.14 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 519 | 774.19 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 561 | 775.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 20 |
| 563 | 775.14 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 565 | 775.21 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 577 | 775.56 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 579 | 775.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 620 | 776.23 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 627 | 776.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 628 | 776.32 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 631 | 776.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 657 | 776.68 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 666 | 776.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 673 | 776.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 683 | 777.07 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 731 | 777.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 735 | 777.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 749 | 777.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 776 | 778.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 818 | 778.72 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 860 | 779.13 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 900 | 779.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 929 | 779.82 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 942 | 779.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 945 | 780.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 974 | 780.28 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |