Os12g0569500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thaumatin, pathogenesis-related family protein.
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Os12g0569500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thaumatin, pathogenesis-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 637.56 | 1.19 | 11.5 | -3.66 | 3.9 | 4.26 | -0.0652 | 1.49 | -0.466 | 18.4 | 0.9601 | 14401 | -- | -- |
| 631.74 | 1.17 | 11.6 | -3.85 | 3.42 | 4.53 | -1.2 | -- | -0.378 | 19.2 | 0.9605 | 14805 | -- | -- |
| 636.84 | 1.18 | 11.6 | -3.57 | 3.81 | 4.35 | -- | 1.59 | -0.41 | 18.6 | 0.9844 | 14673 | -- | -- |
| 631.87 | 1.17 | 11.6 | -4.06 | 3.39 | 4.81 | -- | -- | -0.534 | 19.1 | 0.96 | 14805 | -- | -- |
| 940.08 | 1.43 | 11.3 | -3.7 | -- | 5.21 | -- | 0.132 | -0.293 | -- | 1.121 | 7932 | -- | -- |
| 1022.45 | 1.5 | 11.3 | -2.32 | 3.86 | -- | -0.397 | -- | 0.612 | 18.5 | -- | -- | -- | -- |
| 1022.82 | 1.5 | 11.3 | -2.31 | 3.86 | -- | -- | -- | 0.611 | 18.5 | -- | -- | -- | -- |
| 829.32 | 1.34 | 11.5 | -4.07 | -- | 7.11 | -- | -- | -0.777 | -- | 1.15 | 7931 | -- | -- |
| 983.84 | 1.46 | 11.5 | -- | 3.19 | 3.98 | -- | -- | 0.0582 | 18.2 | 1.499 | 15112 | -- | -- |
| 1796.67 | 1.98 | 11.2 | -2.41 | -- | -- | -- | -- | 0.531 | -- | -- | -- | -- | -- |
| 1163.51 | 1.6 | 11.3 | -- | 3.89 | -- | -- | -- | 0.869 | 18.4 | -- | -- | -- | -- |
| 1144.81 | 1.58 | 11.4 | -- | -- | 7.09 | -- | -- | -0.325 | -- | 1.48 | 7970 | -- | -- |
| 1949.55 | 2.06 | 11.2 | -- | -- | -- | -- | -- | 0.798 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 562.19 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 3 | 562.64 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 20 | 566.49 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 16 | 8 |
| 23 | 566.70 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 26 | 566.94 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 15 | 10 |
| 33 | 567.50 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 48 | 568.54 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 52 | 568.71 | humidity | 70.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 55 | 568.88 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 58 | 568.99 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 62 | 569.41 | humidity | 70.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 75 | 570.36 | humidity | 80.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 116 | 572.44 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 193 | 575.11 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 304 | 577.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 318 | 578.25 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 323 | 578.30 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 332 | 578.46 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 13 | 22 |
| 337 | 578.51 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 389 | 579.35 | humidity | 70.0 | 43200 | < th | dose independent | no | NA | NA |
| 402 | 579.42 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 407 | 579.47 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 502 | 580.49 | humidity | 80.0 | 43200 | < th | dose dependent | no | NA | NA |
| 506 | 580.57 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 509 | 580.60 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 519 | 580.70 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 548 | 581.10 | humidity | 70.0 | 43200 | > th | dose independent | no | NA | NA |
| 552 | 581.15 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 624 | 582.00 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 649 | 582.35 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 681 | 582.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 732 | 583.39 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 755 | 583.70 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 882 | 585.33 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 925 | 586.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 926 | 586.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 7 |
| 951 | 586.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 7 |