BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0685300 Os11g0685300|AK108918
(185 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0685300 Conserved hypothetical protein 192 1e-49
Os11g0684100 Disease resistance protein family protein 113 8e-26
Os11g0684600 Similar to NBS-LRR type resistance protein (Fr... 104 4e-23
Os11g0686475 100 1e-21
Os05g0479700 Similar to NBS-LRR type resistance protein (Fr... 87 9e-18
Os11g0686900 NB-ARC domain containing protein 73 1e-13
>Os11g0685300 Conserved hypothetical protein
Length = 185
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 117/168 (69%)
Query: 1 MEGAMVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVV 60
MEGAMVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVV
Sbjct: 1 MEGAMVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVV 60
Query: 61 RCWMKEVARSTSPAQTQRHXXXXXXXXXXXXXXYVEERATPVWRRRRCLWRLXXXXXXXX 120
RCWMKEVARSTSPAQTQRH YVEERATPVWRRRRCLWRL
Sbjct: 61 RCWMKEVARSTSPAQTQRHSGACCSGGEAAGCGYVEERATPVWRRRRCLWRLAVAVAVAA 120
Query: 121 XXXXXXXXXXXXXXXXXXRWKEARWWCVSXXXXXXXXXXXTGDMTAST 168
RWKEARWWCVS TGDMTAST
Sbjct: 121 AAAAAVAAMTTTAAAAVARWKEARWWCVSVAAAAVAVIVVTGDMTAST 168
>Os11g0684100 Disease resistance protein family protein
Length = 1200
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 61/68 (89%), Gaps = 1/68 (1%)
Query: 1 MEGAMVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGH-SEPKLEGQAMV 59
MEG+M +LPGRL+ L+RRHGS LPKGAEEEI LIKQDLE+IISVLHGH S+PKLE AMV
Sbjct: 1 MEGSMFNLPGRLDRLLRRHGSMLPKGAEEEIPLIKQDLEEIISVLHGHCSKPKLEDHAMV 60
Query: 60 VRCWMKEV 67
VRCWMKEV
Sbjct: 61 VRCWMKEV 68
>Os11g0684600 Similar to NBS-LRR type resistance protein (Fragment)
Length = 244
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 56/63 (88%)
Query: 5 MVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVVRCWM 64
M SLPGRLE L+RRHG+ LP GAE+E+ LIKQD+EKIIS+LHG+S+PKLE AMVVRCWM
Sbjct: 1 MPSLPGRLEGLLRRHGNILPNGAEDELPLIKQDVEKIISILHGYSKPKLEDNAMVVRCWM 60
Query: 65 KEV 67
KEV
Sbjct: 61 KEV 63
>Os11g0686475
Length = 1074
Score = 99.8 bits (247), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/57 (80%), Positives = 51/57 (89%)
Query: 11 RLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVVRCWMKEV 67
RLEEL+ HGS LPKGA+EEI LIKQDLE+IIS+LHGHSEPKLE +MVVRCWMKEV
Sbjct: 41 RLEELLCHHGSMLPKGADEEIPLIKQDLEEIISILHGHSEPKLEDHSMVVRCWMKEV 97
>Os05g0479700 Similar to NBS-LRR type resistance protein (Fragment)
Length = 1132
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 52/66 (78%), Gaps = 3/66 (4%)
Query: 5 MVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQ---AMVVR 61
MV+LPGRL+EL+RRHG+ LPKGA++EI LI+QD+E+I S+LHGH E + MVVR
Sbjct: 1 MVNLPGRLDELLRRHGNILPKGADQEIPLIRQDIEEITSILHGHHSDATELEDYHDMVVR 60
Query: 62 CWMKEV 67
CW KEV
Sbjct: 61 CWTKEV 66
>Os11g0686900 NB-ARC domain containing protein
Length = 1022
Score = 72.8 bits (177), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 6/71 (8%)
Query: 3 GAMVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGH--SEPKLEGQAMVV 60
GA+++LPGRL+ ++ RHGS LPKGAEEEI LIK+DL +IS+L+G+ P+LE
Sbjct: 10 GAVLNLPGRLDGVLLRHGSILPKGAEEEIPLIKRDLHLMISILNGYYSESPELEDATATT 69
Query: 61 ----RCWMKEV 67
RCW KEV
Sbjct: 70 VARRRCWTKEV 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,116,206
Number of extensions: 117286
Number of successful extensions: 430
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 6
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)