Os05g0479700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR type resistance protein (Fragment).
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Os05g0479700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR type resistance protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.56 | 0.471 | 6.17 | 0.159 | 0.453 | -0.738 | -0.435 | -1.94 | 0.0725 | 22.4 | 20.6 | 5473 | -- | -- |
| 104.52 | 0.476 | 6.25 | -0.00997 | 0.448 | -0.391 | -0.406 | -- | 0.00262 | 22.3 | 24.65 | 3172 | -- | -- |
| 101.19 | 0.469 | 6.17 | 0.132 | 0.461 | -0.767 | -- | -1.92 | 0.0656 | 22.4 | 20.41 | 5724 | -- | -- |
| 105.01 | 0.477 | 6.25 | -0.0138 | 0.451 | -0.374 | -- | -- | 0.00416 | 22.4 | 24.7 | 3154 | -- | -- |
| 113.86 | 0.497 | 6.17 | 0.111 | -- | -0.849 | -- | -2.01 | 0.041 | -- | 20.4 | 5378 | -- | -- |
| 107.75 | 0.487 | 6.23 | 0.0947 | 0.471 | -- | -0.384 | -- | 0.117 | 22.5 | -- | -- | -- | -- |
| 108.35 | 0.487 | 6.23 | 0.11 | 0.473 | -- | -- | -- | 0.118 | 22.5 | -- | -- | -- | -- |
| 116.21 | 0.502 | 6.24 | -0.024 | -- | -0.447 | -- | -- | -0.0105 | -- | 24.8 | 2288 | -- | -- |
| 105 | 0.477 | 6.25 | -- | 0.462 | -0.361 | -- | -- | 0.0177 | 22.4 | 24.67 | 3155 | -- | -- |
| 122.06 | 0.516 | 6.21 | 0.118 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 108.68 | 0.488 | 6.23 | -- | 0.474 | -- | -- | -- | 0.106 | 22.5 | -- | -- | -- | -- |
| 116.24 | 0.502 | 6.24 | -- | -- | -0.435 | -- | -- | -0.00671 | -- | 24.73 | 2289 | -- | -- |
| 122.43 | 0.516 | 6.22 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.26 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 21 |
| 3 | 94.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 5 | 95.07 | radiation | 10 | 270 | > th | dose independent | sin | 8 | NA |
| 6 | 95.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 26 | 95.60 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 6 |
| 44 | 95.65 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 65 | 95.85 | wind | 7 | 10 | < th | dose independent | rect. | 8 | 7 |
| 66 | 95.86 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 6 |
| 74 | 95.99 | wind | 7 | 90 | < th | dose independent | rect. | 7 | 22 |
| 115 | 96.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 140 | 96.76 | radiation | 10 | 10 | > th | dose independent | rect. | 8 | 7 |
| 141 | 96.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 151 | 96.86 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 2 |
| 156 | 96.98 | wind | 5 | 270 | < th | dose independent | rect. | 8 | 3 |
| 173 | 97.13 | radiation | 20 | 270 | < th | dose dependent | sin | 7 | NA |
| 197 | 97.17 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 5 |
| 203 | 97.28 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 14 |
| 208 | 97.30 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 5 |
| 212 | 97.35 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 15 | 17 |
| 221 | 97.43 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 236 | 97.57 | wind | 7 | 10 | < th | dose independent | rect. | 8 | 16 |
| 248 | 97.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 264 | 97.73 | wind | 7 | 10 | < th | dose independent | rect. | 8 | 18 |
| 271 | 97.76 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 2 |
| 299 | 97.86 | humidity | 80 | 10 | < th | dose independent | rect. | 8 | 7 |
| 311 | 97.90 | temperature | 30 | 30 | < th | dose independent | rect. | 5 | 13 |
| 320 | 97.92 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 13 |
| 324 | 97.92 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 352 | 98.04 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 353 | 98.05 | temperature | 25 | 90 | > th | dose dependent | sin | 7 | NA |
| 371 | 98.10 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 397 | 98.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 415 | 98.23 | wind | 1 | 10 | > th | dose independent | rect. | 8 | 21 |
| 423 | 98.25 | radiation | 1 | 270 | > th | dose dependent | sin | 9 | NA |
| 452 | 98.30 | wind | 7 | 270 | < th | dose independent | rect. | 16 | 21 |
| 463 | 98.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 488 | 98.39 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 499 | 98.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 532 | 98.50 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 12 |
| 543 | 98.52 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 556 | 98.54 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 583 | 98.63 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 594 | 98.65 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 609 | 98.68 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 637 | 98.73 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 654 | 98.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 762 | 98.96 | temperature | 15 | 90 | > th | dose independent | rect. | 8 | 7 |
| 811 | 99.01 | wind | 1 | 10 | > th | dose independent | rect. | 18 | 11 |
| 812 | 99.01 | radiation | 30 | 10 | < th | dose independent | rect. | 12 | 20 |
| 821 | 99.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 856 | 99.07 | radiation | 20 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 866 | 99.08 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 873 | 99.09 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 903 | 99.14 | radiation | 40 | 90 | < th | dose independent | rect. | 13 | 19 |
| 906 | 99.15 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 8 | 7 |
| 924 | 99.17 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 964 | 99.22 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 988 | 99.23 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 998 | 99.25 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 16 |