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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0685300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.78 (0.0268) R2 : 0.635
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.63 (0.0648) R2dC : 0.511 R2C : 0.519
β3 : -1.21 (0.108) R2dE : 0.124 R2E : 0.0685
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.457 (0.0611) R2dN8 : 0.0634 R2N8 : -0.0316
σ : 0.492
deviance : 111.57
__
_____
C
peak time of C : 14.6
E
wheather : radiation
threshold : 1.54
memory length : 10083
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.72 0.485 4.79 0.0175 1.64 -1.32 -0.896 -0.867 0.429 14.5 1.501 10102 -- --
107.74 0.483 4.78 0.218 1.64 -1.23 -0.887 -- 0.456 14.6 1.53 10088 -- --
109.54 0.487 4.79 -0.000257 1.65 -1.32 -- -0.855 0.429 14.6 1.508 10107 -- --
110.53 0.49 4.78 0.198 1.64 -1.23 -- -- 0.456 14.6 1.53 10083 -- --
222.92 0.699 4.87 -0.14 -- 0.812 -- -1.19 0.0534 -- 1.508 10107 -- --
138.12 0.551 4.85 -0.0386 1.67 -- -0.833 -- 0.13 14.6 -- -- -- --
140.55 0.555 4.86 -0.0598 1.67 -- -- -- 0.125 14.6 -- -- -- --
218.36 0.691 4.86 -0.197 -- 0.934 -- -- 0.105 -- 10.83 21365 -- --
111.57 0.492 4.78 -- 1.63 -1.21 -- -- 0.457 14.6 1.54 10083 -- --
304.36 0.815 4.87 -0.131 -- -- -- -- 0.083 -- -- -- -- --
140.65 0.555 4.86 -- 1.68 -- -- -- 0.132 14.6 -- -- -- --
219.37 0.692 4.86 -- -- 0.93 -- -- 0.127 -- 10.83 21365 -- --
304.81 0.815 4.86 -- -- -- -- -- 0.0975 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.45 temperature 10 270 > th dose dependent rect. 1 20
2 99.79 humidity 80 14400 > th dose dependent rect. 19 4
30 101.39 humidity 80 14400 > th dose independent rect. 18 2
40 101.88 temperature 30 720 < th dose dependent rect. 5 4
50 102.17 humidity 80 14400 < th dose independent rect. 18 1
54 102.19 humidity 80 14400 < th dose independent rect. 17 3
66 102.33 temperature 15 10 > th dose dependent rect. 3 20
72 102.41 humidity 80 14400 > th dose dependent sin 15 NA
97 102.76 humidity 80 14400 > th dose dependent rect. 17 16
101 102.78 temperature 30 720 < th dose dependent rect. 20 16
191 103.30 temperature 10 720 > th dose dependent rect. 18 18
343 103.94 temperature 30 720 < th dose dependent sin 7 NA
411 104.14 humidity 80 14400 > th dose dependent rect. 6 21
419 104.17 humidity 90 14400 < th dose independent rect. 12 13
432 104.21 humidity 90 14400 < th dose independent rect. 10 16
438 104.21 humidity 80 14400 > th dose dependent rect. 1 23
456 104.25 humidity 90 14400 < th dose independent rect. 20 4
519 104.35 humidity 80 14400 > th dose dependent no NA NA
542 104.40 humidity 90 14400 < th dose independent rect. 17 8
620 104.58 humidity 90 14400 < th dose independent sin 17 NA
650 104.63 humidity 70 14400 > th dose dependent rect. 21 23
716 104.80 temperature 10 720 > th dose dependent rect. 2 10
739 104.87 humidity 90 14400 < th dose independent rect. 22 1
811 105.06 humidity 90 14400 < th dose dependent rect. 18 5
818 105.09 humidity 90 14400 < th dose independent rect. 6 21
826 105.11 humidity 70 14400 > th dose independent rect. 14 2
845 105.15 temperature 10 720 > th dose dependent rect. 24 13
870 105.21 humidity 80 14400 > th dose independent rect. 6 15