Os11g0684100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0684100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.19 | 0.271 | 10.8 | 2.1 | 0.912 | -0.341 | 0.339 | 0.666 | 0.474 | 6.59 | 20.4 | 139 | -- | -- |
| 35.02 | 0.276 | 10.9 | 2.03 | 0.883 | -0.428 | 0.134 | -- | 0.457 | 6.52 | 19.7 | 187 | -- | -- |
| 33.48 | 0.269 | 10.8 | 2.1 | 0.912 | -0.344 | -- | 0.641 | 0.475 | 6.57 | 20.4 | 139 | -- | -- |
| 34.87 | 0.275 | 10.9 | 2.02 | 0.892 | -0.499 | -- | -- | 0.451 | 6.57 | 19.3 | 202 | -- | -- |
| 57.68 | 0.354 | 10.8 | 2.24 | -- | -0.711 | -- | 0.566 | 0.722 | -- | 25.3 | 397 | -- | -- |
| 41.02 | 0.3 | 10.9 | 1.88 | 0.935 | -- | 0.198 | -- | 0.376 | 6.31 | -- | -- | -- | -- |
| 41.12 | 0.3 | 10.9 | 1.88 | 0.936 | -- | -- | -- | 0.375 | 6.29 | -- | -- | -- | -- |
| 58.89 | 0.357 | 10.8 | 2.1 | -- | -0.674 | -- | -- | 0.697 | -- | 25.3 | 391 | -- | -- |
| 133.12 | 0.537 | 10.9 | -- | 0.976 | 0.13 | -- | -- | 0.118 | 6.09 | 23.2 | 171 | -- | -- |
| 86.59 | 0.435 | 10.9 | 1.9 | -- | -- | -- | -- | 0.395 | -- | -- | -- | -- | -- |
| 134.21 | 0.542 | 10.9 | -- | 0.963 | -- | -- | -- | 0.166 | 6.18 | -- | -- | -- | -- |
| 169.39 | 0.606 | 10.9 | -- | -- | -0.423 | -- | -- | 0.35 | -- | 25.7 | 364 | -- | -- |
| 182.27 | 0.63 | 10.9 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.92 | temperature | 20 | 30 | > th | dose independent | rect. | 8 | 21 |
| 4 | 32.20 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 20 |
| 6 | 32.30 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 17 |
| 11 | 32.33 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 38 | 32.67 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 16 |
| 40 | 32.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 49 | 32.71 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 65 | 32.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 97 | 32.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 108 | 32.90 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 17 |
| 139 | 33.02 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 3 |
| 180 | 33.10 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 211 | 33.19 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 5 |
| 224 | 33.24 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 249 | 33.30 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 10 |
| 263 | 33.33 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 21 |
| 293 | 33.40 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 5 |
| 304 | 33.43 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 13 |
| 356 | 33.52 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 12 |
| 415 | 33.61 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 23 |
| 495 | 33.75 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 15 |
| 519 | 33.79 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 538 | 33.81 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 23 |
| 558 | 33.85 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 577 | 33.91 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 581 | 33.92 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 589 | 33.94 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 22 |
| 616 | 33.96 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 620 | 33.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 634 | 33.99 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 23 |
| 656 | 34.02 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 667 | 34.03 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 23 |
| 688 | 34.06 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 701 | 34.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 719 | 34.09 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 725 | 34.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 726 | 34.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 740 | 34.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 777 | 34.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 785 | 34.15 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 797 | 34.16 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 809 | 34.18 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 820 | 34.19 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 826 | 34.20 | temperature | 20 | 90 | > th | dose independent | sin | 9 | NA |
| 827 | 34.20 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 845 | 34.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 892 | 34.23 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 894 | 34.23 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 895 | 34.23 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 902 | 34.24 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 909 | 34.25 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 917 | 34.25 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 928 | 34.26 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 23 |
| 932 | 34.27 | temperature | 10 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 964 | 34.29 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 990 | 34.31 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |