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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0686900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NB-ARC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0429) R2 : 0.0983
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.68 (0.253) R2dE : 0.0874 R2E : 0.0896
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.166 (0.0905) R2dN8 : 0.00866 R2N8 : 0.0109
σ : 0.805
deviance : 298.65
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.73
memory length : 12
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.7
open length of G : 2.89

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
295.01 0.8 3.02 -0.294 0.113 3.72 -0.9 -19.7 -0.178 2.18 30 10 13 3
295.67 0.801 2.98 -0.0458 0.229 1.89 -0.584 -- -0.182 3.03 29.6 12 13.8 2.97
297.56 0.803 3.01 -0.289 0.127 3.87 -- -20.7 -0.166 4.09 30.13 10 13.1 3.7
296.73 0.802 2.97 0.0331 0.202 1.76 -- -- -0.173 4.07 29.67 13 13.8 2.8
298.5 0.805 3.02 -0.313 -- 3.95 -- -21.7 -0.171 -- 30.13 10 13.1 3.71
323.43 0.843 2.99 0.0753 0.0033 -- -0.964 -- -0.212 1.76 -- -- -- --
327.02 0.847 2.98 0.105 0.0347 -- -- -- -0.207 7.17 -- -- -- --
298.83 0.805 2.98 0.0452 -- 1.65 -- -- -0.17 -- 29.66 13 13.7 2.88
296.76 0.802 2.98 -- 0.203 1.76 -- -- -0.177 4.07 29.66 13 13.8 2.8
327.08 0.845 2.98 0.106 -- -- -- -- -0.206 -- -- -- -- --
327.31 0.846 2.99 -- 0.0359 -- -- -- -0.218 6.98 -- -- -- --
298.65 0.805 2.98 -- -- 1.68 -- -- -0.166 -- 29.73 12 13.7 2.89
327.38 0.845 2.99 -- -- -- -- -- -0.218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 295.01 temperature 30.0 10 > th dose independent rect. 13 3
4 300.12 temperature 30.0 10 > th dose independent rect. 13 1
5 300.14 radiation 1.0 30 < th dose dependent rect. 5 1
10 301.57 radiation 1.0 10 < th dose independent rect. 5 1
19 303.09 humidity 90.0 10 > th dose dependent rect. 6 1
21 303.13 radiation 20.0 10 > th dose independent rect. 13 20
23 303.34 radiation 20.0 10 > th dose independent sin 12 NA
24 303.64 radiation 20.0 10 < th dose independent sin 12 NA
31 304.03 temperature 30.0 10 > th dose dependent rect. 13 1
32 304.07 humidity 90.0 10 > th dose independent rect. 6 1
36 304.93 wind 1.0 90 < th dose independent rect. 13 2
37 305.15 temperature 30.0 90 > th dose dependent rect. 13 2
47 305.77 wind 3.0 270 < th dose dependent rect. 11 3
68 306.10 atmosphere 1005.0 10 < th dose dependent rect. 4 2
83 306.70 wind 1.0 270 < th dose dependent rect. 13 1
88 307.03 radiation 20.0 10 > th dose independent rect. 15 17
91 307.18 atmosphere 1005.0 90 < th dose dependent rect. 3 3
92 307.27 atmosphere 1005.0 10 < th dose dependent rect. 6 1
112 307.84 wind 3.0 270 < th dose independent rect. 11 2
118 308.00 precipitation 0.1 270 > th dose independent rect. 2 1
119 308.00 precipitation 0.1 270 > th dose dependent rect. 2 1
129 308.31 atmosphere 1005.0 90 < th dose dependent rect. 1 5
131 308.35 atmosphere 1005.0 10 < th dose dependent rect. 2 5
134 308.45 atmosphere 1005.0 90 < th dose independent rect. 24 17
151 308.94 radiation 10.0 30 > th dose dependent rect. 13 19
170 309.05 radiation 10.0 10 > th dose dependent sin 12 NA
192 309.43 radiation 20.0 10 > th dose dependent rect. 15 17
195 309.52 atmosphere 1005.0 270 < th dose dependent rect. 2 1
226 310.26 humidity 90.0 10 > th dose dependent rect. 5 14
234 310.36 atmosphere 1005.0 90 < th dose independent rect. 12 4
242 310.46 humidity 90.0 10 > th dose dependent rect. 5 9
249 310.61 humidity 90.0 10 > th dose dependent rect. 5 5
264 310.76 atmosphere 1005.0 10 < th dose independent rect. 4 2
273 310.94 atmosphere 1005.0 90 < th dose independent rect. 3 14
278 311.03 atmosphere 1005.0 90 < th dose independent rect. 4 1
287 311.13 radiation 40.0 270 > th dose dependent rect. 12 1
305 311.34 wind 5.0 720 > th dose independent rect. 17 1
310 311.40 temperature 25.0 10 < th dose independent rect. 5 5
318 311.46 temperature 25.0 10 < th dose independent rect. 5 2
331 311.59 wind 1.0 10 < th dose independent rect. 6 1
338 311.65 humidity 60.0 270 < th dose independent rect. 12 1
356 311.78 wind 1.0 10 > th dose independent rect. 5 1
359 311.81 radiation 20.0 10 > th dose independent rect. 13 4
377 311.87 wind 3.0 1440 < th dose independent rect. 10 2
381 311.92 wind 3.0 1440 > th dose independent rect. 10 2
382 311.92 radiation 40.0 10 > th dose dependent rect. 14 1
445 312.04 radiation 40.0 10 > th dose independent rect. 14 1
483 312.04 temperature 10.0 10 > th dose dependent rect. 13 14
507 312.28 temperature 30.0 30 < th dose independent rect. 6 23
520 312.38 wind 3.0 1440 < th dose dependent rect. 11 1
530 312.45 atmosphere 1005.0 90 < th dose independent rect. 1 5
560 312.61 atmosphere 1005.0 10 < th dose independent rect. 1 6
618 312.87 humidity 60.0 90 < th dose dependent rect. 12 1
620 312.87 temperature 30.0 10 < th dose dependent rect. 11 18
637 312.99 temperature 30.0 270 > th dose dependent rect. 10 4
651 313.09 wind 9.0 4320 < th dose independent rect. 6 1
675 313.23 radiation 20.0 30 > th dose independent rect. 7 1
718 313.37 radiation 20.0 30 > th dose dependent rect. 13 4
740 313.41 temperature 30.0 270 > th dose dependent rect. 18 20
749 313.45 temperature 20.0 10 > th dose independent rect. 5 1
755 313.47 wind 3.0 1440 < th dose dependent rect. 8 5
774 313.50 atmosphere 1005.0 90 < th dose independent sin 2 NA
794 313.60 temperature 10.0 1440 > th dose independent rect. 6 1
797 313.60 temperature 30.0 1440 < th dose independent rect. 6 1
801 313.60 humidity 50.0 1440 > th dose independent rect. 6 1
806 313.60 atmosphere 995.0 1440 > th dose independent rect. 6 1
807 313.60 atmosphere 1015.0 1440 < th dose independent rect. 6 1
808 313.60 radiation 40.0 1440 < th dose independent rect. 6 1
812 313.60 temperature 10.0 1440 > th dose independent rect. 7 23
815 313.60 atmosphere 1005.0 10 > th dose independent rect. 6 23
819 313.63 wind 1.0 270 < th dose dependent rect. 10 10
841 313.72 wind 3.0 720 > th dose dependent rect. 17 1
844 313.73 temperature 30.0 10 < th dose independent rect. 10 12
887 313.83 temperature 30.0 10 < th dose independent rect. 10 19
891 313.84 humidity 90.0 10 > th dose independent rect. 5 14
894 313.85 temperature 20.0 1440 < th dose independent rect. 4 1
901 313.87 humidity 80.0 30 < th dose dependent rect. 13 1
903 313.89 temperature 20.0 1440 > th dose independent rect. 4 1
909 313.91 temperature 25.0 30 > th dose independent rect. 20 3
928 313.98 radiation 20.0 10 > th dose dependent rect. 16 1
988 314.02 atmosphere 1005.0 90 > th dose independent rect. 10 22
991 314.03 atmosphere 1005.0 90 > th dose independent rect. 10 6