BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0672700 Os11g0672700|AK101124
(588 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0672700 ATP-dependent DNA helicase RecQ family protein 1161 0.0
Os07g0681600 ATP-dependent DNA helicase RecQ family protein 244 1e-64
Os04g0486800 ATP-dependent DNA helicase RecQ family protein 214 2e-55
Os05g0150600 ATP-dependent DNA helicase RecQ family protein 147 2e-35
Os02g0780800 ATP-dependent DNA helicase RecQ family protein 74 3e-13
Os01g0172200 WW/Rsp5/WWP domain containing protein 67 4e-11
Os01g0549400 Similar to RNA helicase-like protein DB10 66 6e-11
>Os11g0672700 ATP-dependent DNA helicase RecQ family protein
Length = 588
Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/588 (95%), Positives = 560/588 (95%)
Query: 1 MAGYEREKKRLLDLAADSGFERDLAADCLDRIVRLYGEGGQGFITVENCGDDFLGXXXXX 60
MAGYEREKKRLLDLAADSGFERDLAADCLDRIVRLYGEGGQGFITVENCGDDFLG
Sbjct: 1 MAGYEREKKRLLDLAADSGFERDLAADCLDRIVRLYGEGGQGFITVENCGDDFLGALADA 60
Query: 61 XXXXXXXXXXXXIENEACGNLNGMMKHGVIDDKEVEVRTPLFRQAESSARQTRINLXXXX 120
IENEACGNLNGMMKHGVIDDKEVEVRTPLFRQAESSARQTRINL
Sbjct: 61 TNNNDDWDDLNAIENEACGNLNGMMKHGVIDDKEVEVRTPLFRQAESSARQTRINLDSFG 120
Query: 121 XXXXXXXETLESHCDRSVSTQKKVNRGNNRCESSTSTSNRETLSYQQLYSLDDINFANVV 180
ETLESHCDRSVSTQKKVNRGNNRCESSTSTSNRETLSYQQLYSLDDINFANVV
Sbjct: 121 FSSDDDFETLESHCDRSVSTQKKVNRGNNRCESSTSTSNRETLSYQQLYSLDDINFANVV 180
Query: 181 IFGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIE 240
IFGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIE
Sbjct: 181 IFGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIE 240
Query: 241 DQIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGNSSFIGIL 300
DQIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGNSSFIGIL
Sbjct: 241 DQIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGNSSFIGIL 300
Query: 301 IGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATASVCKD 360
IGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATASVCKD
Sbjct: 301 IGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATASVCKD 360
Query: 361 ILSTLRIPNATVLKRSFDRTNLNYEVIGKTKTPQKQLGDLLKERFMNMSGIVYCLSKNEC 420
ILSTLRIPNATVLKRSFDRTNLNYEVIGKTKTPQKQLGDLLKERFMNMSGIVYCLSKNEC
Sbjct: 361 ILSTLRIPNATVLKRSFDRTNLNYEVIGKTKTPQKQLGDLLKERFMNMSGIVYCLSKNEC 420
Query: 421 ADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGMGIDKPDVRFV 480
ADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGMGIDKPDVRFV
Sbjct: 421 ADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGMGIDKPDVRFV 480
Query: 481 IHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGRIVCMLRNSGNFKSESFKVAME 540
IHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGRIVCMLRNSGNFKSESFKVAME
Sbjct: 481 IHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGRIVCMLRNSGNFKSESFKVAME 540
Query: 541 QAKKMQTYCELKTECRRQTLLGHFGEQYDRQRCKHGCSPCDNCIKIPS 588
QAKKMQTYCELKTECRRQTLLGHFGEQYDRQRCKHGCSPCDNCIKIPS
Sbjct: 541 QAKKMQTYCELKTECRRQTLLGHFGEQYDRQRCKHGCSPCDNCIKIPS 588
>Os07g0681600 ATP-dependent DNA helicase RecQ family protein
Length = 886
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 163/412 (39%), Positives = 218/412 (52%), Gaps = 31/412 (7%)
Query: 182 FGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIED 241
FG FR Q E + + D V+M TG GKS+CYQ+P + VVV PLLSL++D
Sbjct: 9 FGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVSPLLSLMQD 68
Query: 242 QIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAG-NSSFIGIL 300
Q+++L + + + +L S QT S ++ K +F +LY+TPE+ S F L
Sbjct: 69 QVMSLK-QHGVKSEYLGSTQTDISVSG-----QAEKGAFDVLYMTPEKAVSLPSRFWSNL 122
Query: 301 IGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATASVCKD 360
Q + +DEAHC+S+WGHDFR +Y+ L L+ VP +ALTATAT V D
Sbjct: 123 ----QAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGD 178
Query: 361 ILS--TLRIPNATVLKRSFDRTNLNYEVIGKTKTP---QKQLGDLLKERFMNMSGIVYCL 415
I + TLRIP+ V SFDR NL Y V ++ + + D+ K + S I+YC
Sbjct: 179 IATSLTLRIPHIVV--GSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCT 236
Query: 416 SKNECADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGMGIDKP 475
+ E + L IK + YH + + R + EV V+ ATIAFGMGIDKP
Sbjct: 237 TIRETEQVHEALVAA-GIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKP 295
Query: 476 DVRFVIHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGR--IVCMLRNSGNFKSE 533
DVR VIH KS+ESYYQESGR GRD LP+ C + YQ+ D + C S +
Sbjct: 296 DVRCVIHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHR-- 353
Query: 534 SFKVAMEQAKKMQTYCELKTECRRQTLLGHFGEQYDRQRCKHGCSPCDNCIK 585
K ME Q YC L T C R+ LL +FGE DR C C+NC +
Sbjct: 354 --KAIMESFMAAQKYCLLAT-CHRKFLLQYFGE--DRTT---DCGNCENCTR 397
>Os04g0486800 ATP-dependent DNA helicase RecQ family protein
Length = 873
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 213/378 (56%), Gaps = 26/378 (6%)
Query: 158 SNRETLSYQQLYSLDDINFANVVIFGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLC 217
S RE S Q L SL +N A +G+ SFR Q EA + V+ T +++PTG GKSLC
Sbjct: 263 SVREDPSEQNLKSL--LNAA----YGHDSFRQGQLEAIQQIVAGESTMLVLPTGAGKSLC 316
Query: 218 YQLPATLHPGVTVVVCPLLSLIEDQIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGK 277
YQ+PA + PG+T+VV PLLSL+ DQ+ L +P L S QT + +Q LR+G+
Sbjct: 317 YQVPAMILPGLTLVVSPLLSLMVDQLRKL--PAFLPGGLLASSQTSDEFHDTLQRLRAGE 374
Query: 278 PSFKLLYVTPERMAGNSSFIGILIGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCL 337
K+L+V+PER N F+ I L+A IDEAHC+S+W H+FRP Y L
Sbjct: 375 --IKVLFVSPERFL-NEEFLLIFRDTLPISLVA---IDEAHCISEWSHNFRPSYLRLRAS 428
Query: 338 KQNFPRVP--IMALTATATASVCKDILSTLRIPNATVLKRSFDRTNLNYEVIGKTKTPQK 395
I+A+TATAT ++I++ L IP+ +++ S R NL + T
Sbjct: 429 LLRRKLNVQCILAMTATATTQTLEEIMNALEIPSDNLIQTSQIRENLQLSI----STSDN 484
Query: 396 QLGDLL----KERFMNM-SGIVYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRSNV 450
+L DL+ F++M S IVYC + E +K+L + I YH+GL + RS V
Sbjct: 485 RLKDLMLLLKSPPFVDMRSIIVYCKFQAETDFVSKYLCDN-NITAKSYHSGLLIKNRSRV 543
Query: 451 QGKWHSGEVKVICATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAHCIV 510
Q + S +++V+ AT+AFGMG+DK DV VIH ++ +S+E Y QE+GRAGRD +HC +
Sbjct: 544 QELFCSNKIRVVVATVAFGMGLDKSDVEGVIHYSLPESLEEYIQETGRAGRDGRLSHCHL 603
Query: 511 LYQKKDLGRIVCMLRNSG 528
L +I + + G
Sbjct: 604 LLDSATFYKIRSLSHSDG 621
>Os05g0150600 ATP-dependent DNA helicase RecQ family protein
Length = 844
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 122/215 (56%), Gaps = 19/215 (8%)
Query: 182 FGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIED 241
FG + Q EA A ++ D+ VL TG GKSLC+Q+PA L V VV+ PL+SL+ D
Sbjct: 171 FGFSCVKGFQKEALDAWFAHKDSLVLAATGSGKSLCFQIPALLTAKVVVVISPLISLMHD 230
Query: 242 QIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGNSSFIGILI 301
Q + L K I A FL S Q S+ E ++ +K++YV PE + + L
Sbjct: 231 QCLKLA-KHGISACFLGSGQPDSRV-----EGKAMSGMYKIIYVCPETVL---RLMEPLK 281
Query: 302 GLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPR---------VPIMALTAT 352
L ++ +A F IDE HCVS+WGHDFRPDYR L L++NF +P+MALTAT
Sbjct: 282 KLAEKPGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSASKLKFLEHDIPLMALTAT 341
Query: 353 ATASVCKDILSTLRIPNATVLK-RSFDRTNLNYEV 386
AT V DI+ +L++ TV+ SF R NL + V
Sbjct: 342 ATIPVRADIIKSLKMSEDTVVVLTSFFRPNLRFRV 376
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Query: 411 IVYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGM 470
I+Y ++ + + A +L K +K A Y+A + V ++H ++V+ ATIAFGM
Sbjct: 514 IIYVPTRKQTVELANYLC-KTGLKAAAYNAKMPKSHLRQVHQQFHCNALEVVVATIAFGM 572
Query: 471 GIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAHCIV 510
GIDK +VR +IH +S+E+YYQE+GRAGRD A C +
Sbjct: 573 GIDKSNVRRIIHYGFPQSLEAYYQEAGRAGRDGKLADCTL 612
>Os02g0780800 ATP-dependent DNA helicase RecQ family protein
Length = 117
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 8/114 (7%)
Query: 461 VICATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGRI 520
+I + F GID+ DVR V H + KS+E++YQESGRAGRD P+ ++ Y D ++
Sbjct: 5 LIHWVLFFFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKM 64
Query: 521 VCMLRNSGN-------FKSESFKVAMEQAKKMQTYCELKTECRRQTLLGHFGEQ 567
+LRN+ N +E + A+ ++ YCE T CRR+ ++ FGE+
Sbjct: 65 EFILRNTKNKKSELSSSSTELSEKALADFSQIIDYCENST-CRRKMIIESFGEK 117
>Os01g0172200 WW/Rsp5/WWP domain containing protein
Length = 759
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 138/334 (41%), Gaps = 42/334 (12%)
Query: 189 PLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATL---------HPGVTVVVCP----L 235
P+Q ++ A+ N D + TG GK+L Y +P + G TV+V L
Sbjct: 256 PIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVLSPTREL 315
Query: 236 LSLIEDQIVALNFKFAIPAAFL--NSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGN 293
+ I+D+ I + L + + P +LR + ++ TP R+ N
Sbjct: 316 ATQIQDEAKKFGRSSRISSVCLYGGAPKGP--------QLRDLERGADIVVATPGRL--N 365
Query: 294 SSFIGILIGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATA 353
+ LHQ ++ V+DEA + G F P R + +KQ P+ + TAT
Sbjct: 366 DILEMRRVSLHQ---VSYLVLDEADRMLDMG--FEPQIRKI--VKQVQPKRQTLMFTATW 418
Query: 354 TASVCK---DILST---LRIPNATVLKRSFDRTNLNYEVIGKTKTPQKQLGDLLKERFMN 407
V K D+LS + I N L +++ Y + ++L +L+ +
Sbjct: 419 PKEVRKIASDLLSNPVQVNIGNTDQL--VANKSITQYVDVITPPEKSRRLDQILRSQEPG 476
Query: 408 MSGIVYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIA 467
I++C +K C A+ L +Y H A +R +V ++ SG ++ AT
Sbjct: 477 SKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQA--ERDSVLSEFRSGRCPILVATDV 534
Query: 468 FGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGR 501
G+D D+R V++ +E Y GR GR
Sbjct: 535 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGR 568
>Os01g0549400 Similar to RNA helicase-like protein DB10
Length = 792
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 28/333 (8%)
Query: 183 GNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLH---------PGVTVVVC 233
G S P+Q ++ A+ D + TG GK+L Y LP +H G TV+V
Sbjct: 169 GFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVL 228
Query: 234 PLLSLIEDQIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGN 293
+ QI+ KF + S + +LR ++ TP R+ N
Sbjct: 229 APTRELATQILEEAVKFGRSSRI--SSTCLYGGAPKGPQLRDLDRGVDVVVATPGRL--N 284
Query: 294 SSFIGILIGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATA 353
I L Q ++ V+DEA + G F P R + +K+ PR + TAT
Sbjct: 285 DILEMRRISLKQ---VSYLVLDEADRMLDMG--FEPQIRKI--VKEIPPRRQTLMYTATW 337
Query: 354 TASVCKDILSTLRIPNATVLKRSFDRTNLNYEVIGKTK--TPQ---KQLGDLLKERFMNM 408
V + I L + V S D N + + TP ++L +L+ +
Sbjct: 338 PKEVRR-IAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGS 396
Query: 409 SGIVYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAF 468
+++C +K C A+ L ++ + H + +R V + SG ++ AT
Sbjct: 397 KVLIFCTTKRMCDQLARTLTRQFG--ASAIHGDKSQSEREKVLSHFRSGRSPILVATDVA 454
Query: 469 GMGIDKPDVRFVIHNTMSKSIESYYQESGRAGR 501
G+D D+R VI+ IE Y GR GR
Sbjct: 455 ARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR 487
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,565,240
Number of extensions: 728949
Number of successful extensions: 1450
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1441
Number of HSP's successfully gapped: 9
Length of query: 588
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 482
Effective length of database: 11,501,117
Effective search space: 5543538394
Effective search space used: 5543538394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)