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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0672700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATP-dependent DNA helicase RecQ family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.026) R2 : 0.00603
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.091 (0.0547) R2dN8 : 0.00778 R2N8 : 0.00603
σ : 0.489
deviance : 109.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.33 0.478 3.21 -0.0208 0.164 0.755 -0.397 -3.24 0.12 4.75 1000 2188 -- --
103.65 0.474 3.19 0.129 0.166 1.21 -0.436 -- 0.11 4.69 991.5 2732 -- --
103.74 0.474 3.21 -0.0106 0.162 0.737 -- -3.16 0.121 4.78 1000 2195 -- --
104.07 0.475 3.19 0.134 0.164 1.22 -- -- 0.113 4.64 991.5 2239 -- --
105.12 0.478 3.21 -0.0091 -- 0.741 -- -3.18 0.124 -- 1000 2180 -- --
108.06 0.487 3.2 0.0905 0.159 -- -0.36 -- 0.096 5.35 -- -- -- --
108.38 0.488 3.2 0.0898 0.157 -- -- -- 0.0976 5.3 -- -- -- --
105.29 0.478 3.19 0.138 -- 1.19 -- -- 0.121 -- 995.1 2669 -- --
104.41 0.476 3.2 -- 0.169 1.19 -- -- 0.0978 4.59 995.1 2500 -- --
109.66 0.489 3.2 0.0951 -- -- -- -- 0.102 -- -- -- -- --
108.6 0.487 3.2 -- 0.158 -- -- -- 0.0876 5.28 -- -- -- --
105.78 0.479 3.2 -- -- 1.15 -- -- 0.105 -- 995.1 2650 -- --
109.9 0.489 3.2 -- -- -- -- -- 0.091 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.39 atmosphere 1015.0 30 < th dose dependent rect. 2 1
3 98.42 wind 3.0 30 < th dose independent rect. 2 1
4 98.42 temperature 20.0 30 > th dose dependent rect. 2 1
7 98.44 wind 3.0 30 < th dose dependent rect. 2 1
11 98.44 temperature 10.0 30 > th dose dependent rect. 2 1
13 98.44 atmosphere 1005.0 30 > th dose dependent rect. 2 1
14 98.45 humidity 80.0 30 > th dose independent rect. 2 1
16 98.46 temperature 10.0 30 > th dose independent rect. 2 1
18 98.46 temperature 30.0 30 < th dose independent rect. 2 1
19 98.46 humidity 50.0 30 > th dose independent rect. 2 1
22 98.46 atmosphere 995.0 30 > th dose independent rect. 2 1
23 98.46 atmosphere 1010.0 30 < th dose independent rect. 2 1
25 98.46 radiation 1.0 30 < th dose independent rect. 2 1
30 98.46 precipitation 0.1 30 < th dose independent rect. 2 1
31 98.46 temperature 10.0 30 > th dose independent rect. 3 23
32 98.46 humidity 50.0 30 > th dose dependent rect. 2 1
33 98.46 radiation 1.0 30 < th dose dependent rect. 2 1
38 98.46 precipitation 0.1 30 < th dose dependent rect. 2 1
45 98.51 atmosphere 995.0 30 > th dose dependent rect. 2 1
48 98.52 atmosphere 1005.0 30 > th dose independent rect. 2 1
50 98.53 temperature 30.0 30 < th dose dependent rect. 2 1
52 98.60 wind 1.0 30 > th dose independent rect. 2 1
58 98.68 wind 9.0 30 < th dose independent rect. 3 23
60 98.69 atmosphere 995.0 30 > th dose independent rect. 3 23
106 99.01 precipitation 0.1 30 < th dose independent rect. 3 23
107 99.01 precipitation 0.1 30 < th dose dependent rect. 3 23
122 99.91 radiation 1.0 14400 < th dose dependent rect. 3 1
134 100.15 wind 9.0 1440 < th dose independent rect. 3 1
135 100.15 temperature 10.0 1440 > th dose independent rect. 3 1
138 100.15 temperature 30.0 1440 < th dose independent rect. 3 1
142 100.15 humidity 50.0 1440 > th dose independent rect. 3 1
151 100.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
152 100.15 radiation 1.0 1440 < th dose independent rect. 3 1
172 100.15 temperature 10.0 1440 > th dose independent rect. 4 23
190 100.73 radiation 10.0 10 > th dose independent rect. 6 1
216 100.73 radiation 10.0 10 > th dose dependent rect. 6 1
243 101.07 humidity 50.0 720 > th dose independent rect. 7 8
244 101.11 wind 1.0 30 < th dose independent rect. 23 4
247 101.18 humidity 50.0 30 > th dose independent rect. 3 23
261 101.74 wind 1.0 30 < th dose independent rect. 14 13
265 101.99 humidity 50.0 720 > th dose independent rect. 23 16
271 102.29 wind 3.0 10 < th dose dependent rect. 23 4
284 102.60 atmosphere 995.0 4320 > th dose independent rect. 24 4
288 102.66 atmosphere 1005.0 90 > th dose dependent rect. 1 6
293 102.77 atmosphere 1005.0 10 > th dose dependent rect. 2 6
301 102.86 humidity 90.0 90 < th dose independent rect. 2 1
302 102.87 wind 9.0 720 < th dose independent rect. 19 8
307 102.94 radiation 30.0 4320 < th dose independent rect. 4 3
308 102.94 atmosphere 995.0 4320 > th dose independent rect. 21 7
311 102.96 atmosphere 1000.0 1440 > th dose independent rect. 20 1
316 103.00 radiation 10.0 30 < th dose dependent rect. 3 23
317 103.02 atmosphere 1000.0 1440 > th dose independent rect. 19 3
343 103.06 atmosphere 1000.0 1440 < th dose independent rect. 18 4
350 103.09 wind 1.0 10 < th dose independent rect. 6 21
355 103.10 atmosphere 995.0 4320 > th dose independent rect. 24 11
364 103.15 atmosphere 1000.0 1440 < th dose independent rect. 18 1
369 103.17 atmosphere 1000.0 1440 < th dose independent rect. 12 1
371 103.18 atmosphere 1015.0 30 < th dose independent rect. 3 23
380 103.25 atmosphere 1000.0 1440 > th dose independent rect. 12 1
383 103.26 atmosphere 995.0 720 > th dose independent rect. 7 8
387 103.27 precipitation 0.1 720 < th dose independent rect. 19 8
388 103.27 precipitation 0.1 720 < th dose dependent rect. 19 8
389 103.28 temperature 10.0 720 > th dose independent rect. 19 8
390 103.28 temperature 30.0 720 < th dose independent rect. 19 8
391 103.28 humidity 50.0 720 > th dose independent rect. 19 8
392 103.28 atmosphere 995.0 720 > th dose independent rect. 19 8
393 103.28 radiation 1.0 720 < th dose independent rect. 19 8
398 103.28 temperature 10.0 720 > th dose independent rect. 3 16
399 103.28 radiation 1.0 720 < th dose dependent rect. 19 8
410 103.30 radiation 40.0 30 < th dose dependent rect. 3 23
419 103.33 temperature 10.0 720 > th dose independent rect. 7 8
420 103.33 atmosphere 1015.0 720 < th dose independent rect. 7 8
421 103.33 temperature 10.0 720 > th dose independent rect. 15 16
436 103.38 atmosphere 1010.0 30 < th dose independent rect. 3 8
438 103.38 atmosphere 1000.0 1440 < th dose dependent rect. 14 1
450 103.41 atmosphere 995.0 4320 > th dose independent rect. 21 14
457 103.43 radiation 40.0 10 < th dose independent rect. 3 23
461 103.43 temperature 10.0 30 > th dose dependent rect. 3 23
472 103.45 atmosphere 995.0 4320 > th dose independent rect. 24 9
498 103.48 atmosphere 1000.0 1440 < th dose independent rect. 12 11
576 103.57 wind 3.0 30 < th dose dependent rect. 16 11
587 103.58 temperature 30.0 30 < th dose independent rect. 3 23
588 103.58 atmosphere 1000.0 1440 < th dose dependent sin 22 NA
596 103.59 wind 9.0 4320 > th dose independent rect. 23 1
597 103.59 atmosphere 995.0 4320 < th dose independent rect. 1 1
650 103.59 humidity 90.0 90 < th dose independent rect. 1 6
708 103.59 atmosphere 1000.0 1440 > th dose independent rect. 11 11
760 103.59 wind 9.0 4320 > th dose dependent rect. 23 1
761 103.59 atmosphere 995.0 4320 < th dose dependent rect. 1 1
766 103.59 atmosphere 995.0 4320 < th dose dependent rect. 21 1
930 103.61 atmosphere 1000.0 1440 < th dose independent sin 17 NA
997 103.66 atmosphere 995.0 4320 > th dose independent rect. 21 4