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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0681600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATP-dependent DNA helicase RecQ family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0254) R2 : 0.000268
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0187 (0.0534) R2dN8 : 0.000346 R2N8 : 0.000268
σ : 0.478
deviance : 104.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.03 0.47 3.36 0.202 0.446 0.357 -1.41 -1.47 0.0734 11.5 1.273e-05 130 -- --
101.92 0.47 3.37 0.0886 0.44 0.348 0.2 -- 0.0506 11.7 0.02756 144 -- --
101.37 0.469 3.36 0.154 0.49 0.412 -- -0.385 0.0685 11.9 0.009974 151 -- --
102.06 0.471 3.37 0.105 0.437 0.348 -- -- 0.0447 11.7 0.03 144 -- --
102.82 0.472 3.38 0.115 -- 0.224 -- -0.563 0.0293 -- 5.526e-06 833 -- --
103.43 0.477 3.38 0.0762 0.154 -- -0.145 -- 0.0238 6.69 -- -- -- --
103.47 0.476 3.38 0.0745 0.153 -- -- -- 0.0245 7.05 -- -- -- --
102.85 0.472 3.38 0.119 -- 0.25 -- -- 0.044 -- 3.162e-06 852 -- --
102.37 0.471 3.37 -- 0.435 0.348 -- -- 0.0424 11.7 0.03002 144 -- --
104.71 0.478 3.38 0.0775 -- -- -- -- 0.0273 -- -- -- -- --
103.62 0.476 3.38 -- 0.154 -- -- -- 0.0162 7.02 -- -- -- --
103.11 0.473 3.38 -- -- 0.267 -- -- 0.0282 -- 0.008364 846 -- --
104.87 0.478 3.38 -- -- -- -- -- 0.0187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.85 humidity 70.0 4320 > th dose independent rect. 21 1
2 95.42 temperature 25.0 30 > th dose independent rect. 20 3
3 95.52 temperature 25.0 30 > th dose dependent rect. 20 3
11 96.79 atmosphere 1005.0 10 > th dose dependent rect. 20 3
13 97.12 atmosphere 1000.0 30 > th dose independent rect. 21 23
22 97.55 temperature 15.0 1440 > th dose independent rect. 21 1
23 97.57 radiation 10.0 43200 < th dose dependent rect. 21 1
25 97.59 temperature 25.0 720 > th dose dependent rect. 4 4
35 97.65 temperature 15.0 30 > th dose independent rect. 21 23
47 97.70 temperature 30.0 1440 < th dose independent rect. 21 1
51 97.70 humidity 50.0 1440 > th dose independent rect. 21 1
57 97.70 atmosphere 995.0 1440 > th dose independent rect. 21 1
58 97.70 radiation 1.0 1440 < th dose independent rect. 21 1
78 97.70 temperature 10.0 1440 > th dose independent rect. 22 23
82 97.72 wind 3.0 30 > th dose independent rect. 20 1
83 97.72 atmosphere 1005.0 30 > th dose independent rect. 20 1
84 97.73 atmosphere 1005.0 30 > th dose dependent rect. 20 1
88 97.75 humidity 80.0 30 > th dose independent rect. 20 1
89 97.75 humidity 90.0 30 < th dose independent rect. 20 1
90 97.75 wind 1.0 30 > th dose dependent rect. 20 1
93 97.77 temperature 25.0 30 > th dose independent rect. 20 1
97 97.79 wind 5.0 30 < th dose independent rect. 20 1
100 97.79 temperature 10.0 30 > th dose independent rect. 20 1
102 97.79 temperature 30.0 30 < th dose independent rect. 20 1
103 97.79 humidity 50.0 30 > th dose independent rect. 20 1
106 97.79 atmosphere 995.0 30 > th dose independent rect. 20 1
108 97.79 atmosphere 1010.0 30 < th dose independent rect. 20 1
110 97.79 radiation 1.0 30 < th dose independent rect. 20 1
115 97.79 precipitation 0.1 30 < th dose independent rect. 20 1
116 97.79 temperature 25.0 720 > th dose independent rect. 5 4
119 97.79 temperature 10.0 30 > th dose dependent rect. 20 1
120 97.79 radiation 1.0 30 < th dose dependent rect. 20 1
125 97.79 precipitation 0.1 30 < th dose dependent rect. 20 1
130 97.80 humidity 50.0 30 > th dose dependent rect. 20 1
133 97.81 temperature 30.0 30 < th dose dependent rect. 20 1
136 97.82 wind 9.0 30 < th dose independent rect. 21 23
137 97.82 wind 9.0 30 < th dose dependent rect. 20 1
138 97.82 humidity 90.0 30 < th dose dependent rect. 20 1
151 97.90 atmosphere 1015.0 30 < th dose dependent rect. 20 1
163 98.03 humidity 50.0 10 > th dose independent rect. 21 23
169 98.05 wind 9.0 1440 < th dose independent rect. 21 1
202 98.16 temperature 25.0 10 > th dose dependent rect. 20 9
216 98.36 humidity 80.0 14400 < th dose dependent rect. 3 6
218 98.38 humidity 90.0 10 < th dose independent rect. 20 3
227 98.46 precipitation 0.1 720 < th dose independent rect. 15 8
229 98.46 precipitation 0.1 720 < th dose dependent rect. 15 8
231 98.49 temperature 25.0 90 > th dose independent rect. 19 10
239 98.54 wind 1.0 14400 < th dose dependent rect. 6 1
240 98.55 temperature 25.0 720 > th dose independent rect. 8 1
243 98.57 precipitation 0.1 30 < th dose independent rect. 21 23
244 98.57 precipitation 0.1 30 < th dose dependent rect. 21 23
245 98.60 humidity 70.0 14400 > th dose independent rect. 8 1
246 98.60 temperature 25.0 10 > th dose independent rect. 24 20
257 98.68 temperature 10.0 30 > th dose dependent rect. 23 21
258 98.69 humidity 70.0 14400 < th dose independent rect. 8 1
260 98.73 wind 5.0 14400 < th dose independent rect. 11 1
262 98.74 humidity 70.0 14400 > th dose independent rect. 24 9
263 98.75 humidity 70.0 14400 > th dose independent rect. 4 5
271 98.76 humidity 70.0 14400 > th dose independent rect. 6 3
276 98.77 atmosphere 1005.0 10 > th dose dependent rect. 2 3
278 98.78 precipitation 0.1 720 < th dose independent rect. 11 16
280 98.78 precipitation 0.1 720 < th dose dependent rect. 11 16
285 98.80 atmosphere 995.0 720 > th dose independent rect. 23 16
287 98.81 radiation 1.0 43200 < th dose dependent rect. 3 1
291 98.84 atmosphere 1000.0 720 > th dose independent rect. 3 8
299 98.88 precipitation 0.1 1440 < th dose independent rect. 21 1
300 98.88 precipitation 0.1 1440 < th dose dependent rect. 21 1
301 98.90 atmosphere 1005.0 30 > th dose independent rect. 20 3
308 98.95 wind 9.0 720 < th dose independent rect. 3 8
310 98.96 temperature 25.0 10 > th dose independent rect. 5 15
311 98.96 atmosphere 1000.0 30 > th dose independent rect. 3 23
325 98.98 atmosphere 1005.0 90 > th dose dependent rect. 2 1
329 99.00 temperature 10.0 30 > th dose dependent rect. 21 23
330 99.01 wind 1.0 14400 < th dose independent rect. 6 1
331 99.01 humidity 70.0 4320 > th dose independent rect. 21 3
339 99.09 radiation 10.0 720 > th dose independent rect. 8 1
341 99.10 temperature 10.0 720 > th dose independent rect. 3 8
343 99.10 temperature 10.0 720 > th dose independent rect. 11 16
346 99.10 temperature 20.0 90 > th dose dependent rect. 3 16
348 99.13 temperature 10.0 720 > th dose independent rect. 15 8
350 99.13 atmosphere 1000.0 720 > th dose independent rect. 21 14
351 99.13 temperature 10.0 720 > th dose independent rect. 23 16
352 99.13 atmosphere 1000.0 30 > th dose independent rect. 23 21
358 99.15 atmosphere 1000.0 720 > th dose independent rect. 21 18
365 99.17 wind 5.0 14400 > th dose independent rect. 11 1
367 99.18 humidity 50.0 720 > th dose independent rect. 3 8
378 99.23 radiation 10.0 43200 < th dose dependent rect. 23 1
379 99.23 temperature 10.0 90 > th dose dependent rect. 5 14
381 99.24 atmosphere 1000.0 720 > th dose independent rect. 23 10
392 99.29 temperature 20.0 90 > th dose dependent rect. 5 14
397 99.32 wind 5.0 14400 < th dose independent rect. 10 5
416 99.39 humidity 70.0 4320 > th dose independent rect. 22 5
419 99.40 atmosphere 1000.0 720 > th dose independent rect. 21 12
420 99.41 wind 5.0 14400 > th dose independent rect. 10 5
422 99.41 temperature 25.0 90 > th dose dependent rect. 2 2
424 99.41 temperature 10.0 10 > th dose dependent rect. 5 15
427 99.42 atmosphere 1000.0 30 > th dose independent rect. 23 23
428 99.42 humidity 50.0 4320 > th dose dependent rect. 4 5
436 99.44 wind 3.0 14400 > th dose dependent rect. 11 1
451 99.49 humidity 80.0 30 > th dose independent rect. 20 3
461 99.52 radiation 1.0 720 < th dose independent rect. 8 1
462 99.52 temperature 25.0 90 > th dose independent rect. 1 3
465 99.52 radiation 1.0 720 < th dose dependent rect. 8 1
479 99.55 temperature 25.0 10 > th dose independent rect. 8 12
487 99.56 atmosphere 1005.0 30 > th dose dependent rect. 11 12
518 99.61 radiation 1.0 720 < th dose dependent rect. 18 9
522 99.62 temperature 30.0 270 < th dose independent rect. 9 12
537 99.64 radiation 1.0 90 < th dose dependent rect. 1 23
542 99.65 radiation 10.0 10 < th dose independent rect. 21 23
552 99.66 radiation 1.0 90 < th dose dependent rect. 19 22
557 99.67 radiation 10.0 270 > th dose independent rect. 14 19
564 99.69 wind 1.0 14400 > th dose independent rect. 6 1
570 99.70 temperature 25.0 720 < th dose independent rect. 2 8
571 99.70 temperature 25.0 720 < th dose independent rect. 2 10
575 99.71 atmosphere 995.0 720 > th dose independent rect. 11 16
586 99.72 wind 9.0 720 < th dose dependent rect. 2 1
593 99.73 temperature 25.0 10 > th dose independent rect. 3 17
617 99.77 atmosphere 1000.0 10 > th dose independent rect. 2 12
634 99.79 atmosphere 1000.0 720 > th dose independent rect. 14 1
641 99.80 atmosphere 1000.0 90 > th dose independent rect. 23 12
651 99.81 wind 7.0 14400 < th dose dependent rect. 11 1
671 99.83 wind 9.0 720 < th dose independent rect. 15 8
672 99.83 atmosphere 995.0 720 > th dose independent rect. 15 8
673 99.83 radiation 40.0 30 < th dose independent rect. 14 12
683 99.85 atmosphere 1000.0 90 > th dose independent rect. 5 14
684 99.85 temperature 30.0 1440 < th dose independent rect. 14 21
685 99.85 humidity 50.0 10 > th dose independent rect. 3 23
690 99.86 atmosphere 1015.0 720 < th dose independent rect. 3 8
692 99.86 humidity 60.0 10 > th dose independent rect. 14 12
712 99.89 precipitation 0.1 1440 < th dose independent rect. 23 1
715 99.89 atmosphere 1000.0 10 > th dose independent rect. 14 12
718 99.89 precipitation 0.1 1440 < th dose dependent rect. 23 1
731 99.90 temperature 20.0 720 > th dose dependent rect. 21 14
740 99.92 humidity 50.0 4320 > th dose independent rect. 16 1
742 99.92 humidity 90.0 90 < th dose independent rect. 2 3
753 99.93 wind 5.0 30 < th dose independent rect. 20 3
754 99.93 humidity 90.0 720 < th dose independent rect. 1 4
756 99.93 temperature 30.0 1440 > th dose independent rect. 14 21
766 99.94 atmosphere 1000.0 720 > th dose independent rect. 3 6
768 99.94 radiation 40.0 30 < th dose independent rect. 21 23
779 99.95 temperature 20.0 720 > th dose dependent rect. 3 1
781 99.95 humidity 50.0 4320 > th dose dependent rect. 7 1
791 99.95 radiation 40.0 10 < th dose dependent rect. 21 23
795 99.96 temperature 15.0 720 > th dose dependent rect. 23 1
817 99.98 wind 1.0 14400 < th dose independent rect. 4 4
826 99.99 temperature 25.0 90 > th dose independent rect. 2 1
840 100.00 wind 5.0 720 < th dose independent rect. 2 1
841 100.00 temperature 20.0 720 < th dose independent rect. 4 1
842 100.00 humidity 80.0 720 < th dose independent rect. 8 1
843 100.00 humidity 60.0 43200 < th dose independent rect. 11 1
859 100.01 wind 3.0 90 < th dose independent rect. 2 1
861 100.01 humidity 60.0 4320 > th dose independent rect. 18 1
864 100.01 temperature 30.0 1440 < th dose independent rect. 14 16
873 100.02 temperature 30.0 1440 < th dose independent rect. 14 10
876 100.02 wind 9.0 4320 > th dose independent rect. 21 20
884 100.02 wind 3.0 14400 > th dose dependent rect. 10 5
891 100.03 humidity 60.0 4320 < th dose independent rect. 18 1
894 100.03 temperature 30.0 1440 < th dose independent rect. 14 8
919 100.04 radiation 20.0 10 < th dose dependent rect. 21 23
923 100.05 wind 9.0 4320 > th dose independent rect. 3 14
928 100.05 radiation 1.0 90 < th dose independent rect. 19 22
931 100.05 humidity 60.0 14400 < th dose dependent rect. 12 1
942 100.06 temperature 30.0 1440 < th dose independent rect. 14 5
946 100.06 radiation 10.0 10 < th dose independent rect. 23 21
952 100.06 wind 9.0 4320 > th dose dependent rect. 14 3
958 100.07 wind 9.0 1440 < th dose independent rect. 3 1
959 100.07 temperature 10.0 1440 > th dose independent rect. 3 1
962 100.07 temperature 30.0 1440 < th dose independent rect. 3 1
966 100.07 humidity 50.0 1440 > th dose independent rect. 3 1
975 100.07 atmosphere 995.0 1440 > th dose independent rect. 3 1
976 100.07 radiation 1.0 1440 < th dose independent rect. 3 1