Os02g0780800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP-dependent DNA helicase RecQ family protein.
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Os02g0780800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP-dependent DNA helicase RecQ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.49 | 0.268 | 9.31 | -0.543 | 0.238 | -0.58 | -0.277 | 0.468 | 0.307 | 23.4 | 23.12 | 1056 | -- | -- |
| 32.68 | 0.266 | 9.3 | -0.493 | 0.249 | -0.69 | -0.359 | -- | 0.316 | 23.3 | 22.8 | 1169 | -- | -- |
| 32.78 | 0.267 | 9.31 | -0.559 | 0.235 | -0.55 | -- | 0.644 | 0.304 | 23.6 | 23.21 | 1007 | -- | -- |
| 33.21 | 0.268 | 9.3 | -0.474 | 0.236 | -0.681 | -- | -- | 0.324 | 23.4 | 22.8 | 1090 | -- | -- |
| 35.67 | 0.278 | 9.32 | -0.618 | -- | -0.612 | -- | 0.823 | 0.253 | -- | 25.64 | 861 | -- | -- |
| 37.92 | 0.289 | 9.28 | -0.303 | 0.29 | -- | -0.383 | -- | 0.425 | 23.6 | -- | -- | -- | -- |
| 38.55 | 0.291 | 9.28 | -0.288 | 0.292 | -- | -- | -- | 0.426 | 23.6 | -- | -- | -- | -- |
| 36.28 | 0.281 | 9.3 | -0.488 | -- | -0.766 | -- | -- | 0.306 | -- | 23 | 895 | -- | -- |
| 38.22 | 0.288 | 9.28 | -- | 0.243 | -0.419 | -- | -- | 0.406 | 23.5 | 23.08 | 880 | -- | -- |
| 43.91 | 0.31 | 9.27 | -0.28 | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
| 40.74 | 0.299 | 9.27 | -- | 0.289 | -- | -- | -- | 0.458 | 23.6 | -- | -- | -- | -- |
| 41.72 | 0.301 | 9.28 | -- | -- | -0.527 | -- | -- | 0.39 | -- | 23.16 | 860 | -- | -- |
| 45.97 | 0.316 | 9.26 | -- | -- | -- | -- | -- | 0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 2 | 30.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 3 | 30.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 4 | 30.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 5 | 30.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 6 | 30.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 7 | 30.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 8 | 30.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 9 | 30.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 11 | 30.37 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 13 | 30.37 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 25 | 30.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 46 | 30.71 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 49 | 30.74 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 54 | 30.77 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 63 | 30.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 74 | 31.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 77 | 31.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 83 | 31.21 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 85 | 31.21 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 96 | 31.42 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 100 | 31.44 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 101 | 31.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 103 | 31.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 105 | 31.46 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 107 | 31.46 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 111 | 31.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 113 | 31.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 124 | 31.55 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 128 | 31.56 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 135 | 31.58 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 9 |
| 138 | 31.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 140 | 31.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 146 | 31.61 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 149 | 31.62 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 151 | 31.63 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 153 | 31.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 161 | 31.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 162 | 31.68 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 163 | 31.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 171 | 31.70 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 172 | 31.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 182 | 31.73 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 197 | 31.78 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 201 | 31.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 203 | 31.80 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 204 | 31.80 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 220 | 31.87 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 231 | 31.91 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 232 | 31.91 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 240 | 31.93 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 267 | 31.98 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 6 |
| 269 | 31.99 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 270 | 31.99 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 276 | 32.00 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 278 | 32.01 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 281 | 32.01 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 283 | 32.02 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 285 | 32.02 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 289 | 32.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 290 | 32.03 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 297 | 32.04 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 307 | 32.06 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 327 | 32.08 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 328 | 32.08 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 332 | 32.09 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 334 | 32.09 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 345 | 32.10 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 359 | 32.11 | temperature | 25.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 364 | 32.12 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 373 | 32.13 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 379 | 32.13 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 7 |
| 383 | 32.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 385 | 32.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 402 | 32.15 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 408 | 32.16 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 425 | 32.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 439 | 32.18 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 444 | 32.19 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 457 | 32.19 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 9 |
| 467 | 32.20 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 473 | 32.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 476 | 32.21 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 486 | 32.21 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 496 | 32.22 | temperature | 25.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 502 | 32.22 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 503 | 32.22 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 528 | 32.23 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 536 | 32.24 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 550 | 32.24 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 555 | 32.24 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 559 | 32.25 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 580 | 32.26 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 584 | 32.26 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 598 | 32.27 | temperature | 25.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 636 | 32.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 646 | 32.29 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 648 | 32.29 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 649 | 32.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 715 | 32.32 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 768 | 32.35 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 772 | 32.35 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 785 | 32.36 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 804 | 32.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 811 | 32.38 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 837 | 32.39 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 841 | 32.39 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 864 | 32.40 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 879 | 32.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 906 | 32.42 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 950 | 32.43 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |