BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0780800 Os02g0780800|J033036E15
(117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35740.1 | chr4:16936233-16940172 FORWARD LENGTH=714 136 3e-33
AT1G10930.1 | chr1:3648032-3654997 REVERSE LENGTH=1189 70 3e-13
AT1G60930.1 | chr1:22431093-22438302 REVERSE LENGTH=1151 69 7e-13
AT1G31360.1 | chr1:11232422-11237412 FORWARD LENGTH=706 67 2e-12
AT3G05740.1 | chr3:1698180-1701228 FORWARD LENGTH=607 67 2e-12
AT5G27680.1 | chr5:9794244-9798637 REVERSE LENGTH=859 56 3e-09
AT1G27880.1 | chr1:9708940-9713901 FORWARD LENGTH=912 49 5e-07
>AT4G35740.1 | chr4:16936233-16940172 FORWARD LENGTH=714
Length = 713
Score = 136 bits (342), Expect = 3e-33, Method: Composition-based stats.
Identities = 63/106 (59%), Positives = 77/106 (72%), Gaps = 7/106 (6%)
Query: 12 FFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFILRXX 71
F GID++DVR+VCH+N+PKSME+FYQESGRAGRDQ PS+SVLYYG+DDRKKME++LR
Sbjct: 316 FGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLR-- 373
Query: 72 XXXXXXXXXXXXXXXXXALADFSQIIDYCENSTCRRKMIIESFGEK 117
+DF QI+ YCE S CRRK I+ESFGE+
Sbjct: 374 -----NSENKKSSSSKKPTSDFEQIVTYCEGSGCRRKKILESFGEE 414
>AT1G10930.1 | chr1:3648032-3654997 REVERSE LENGTH=1189
Length = 1188
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 12 FFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFIL--- 68
F GI++ DVR V H++LPKS+E ++QE GRAGRD Q S VLYYG D +++ ++
Sbjct: 733 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQG 792
Query: 69 ---RXXXXXXXXXXXXXXXXXXXALADFSQIIDYCENST-CRRKMIIESFGEK 117
+ + +++ YCEN CRR + + GEK
Sbjct: 793 GVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEK 845
>AT1G60930.1 | chr1:22431093-22438302 REVERSE LENGTH=1151
Length = 1150
Score = 68.6 bits (166), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 12 FFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFIL--- 68
F GI++ DVR V H++LPKS+E ++QE GRAGRD Q S VLYY D +++ ++
Sbjct: 749 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQG 808
Query: 69 ---RXXXXXXXXXXXXXXXXXXXALADFSQIIDYCENST-CRRKMIIESFGEK 117
+ + +++ YCEN CRR + + GEK
Sbjct: 809 GLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYCENEVDCRRFLQLVHLGEK 861
>AT1G31360.1 | chr1:11232422-11237412 FORWARD LENGTH=706
Length = 705
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 5 LIHWVLFFFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKM 64
+I + F GI++ DVR V H++L KSME +YQESGRAGRD PS+ +L++ D +
Sbjct: 366 VIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQ 425
Query: 65 EFILRXXXXXXXXXXXXXXXXXXXALADFSQIIDYCENST-CRRKMIIESFGE 116
++ L + I+ YC++ T CRR FGE
Sbjct: 426 SSMV---------------FYEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGE 463
>AT3G05740.1 | chr3:1698180-1701228 FORWARD LENGTH=607
Length = 606
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 5 LIHWVLFFFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKM 64
++ + F GID+ DVR V H L K++E++YQESGRAGRD ++ + Y D ++
Sbjct: 481 IVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRV 540
Query: 65 EFILRXXXXXXXXXXXXXXXXXXXALADFSQIIDYCENST-CRRKMIIESFGE 116
+LR A+A ++ YCE T CRR+M++E FGE
Sbjct: 541 VCMLR-------NGQGRNMDRFKSAMAQAKKMQQYCELKTECRRQMLLEYFGE 586
>AT5G27680.1 | chr5:9794244-9798637 REVERSE LENGTH=859
Length = 858
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 9 VLFFFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFIL 68
+ F GID+++VR + HY +S+EA+YQE+GRAGRD + ++ VLY L +
Sbjct: 554 TIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLYADLSRAPTLLPSR 613
Query: 69 RXXXXXXXXXXXXXXXXXXXALADFSQIIDYCENST-CRRKMIIESFGEK 117
R A S Y N++ CR K+++E FGE+
Sbjct: 614 R------------SKEQTEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEE 651
>AT1G27880.1 | chr1:9708940-9713901 FORWARD LENGTH=912
Length = 911
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 12 FFQGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKM 64
F G+D+ DV V H+++P SME + QE GRAGRD + S L+Y D K+
Sbjct: 546 FGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKL 598
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,071,186
Number of extensions: 59816
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 7
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)