BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0592600 Os11g0592600|AK068548
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0592600 Targeting for Xklp2 family protein 651 0.0
Os06g0606800 Targeting for Xklp2 family protein 99 6e-21
Os03g0799100 Similar to WAVE-DAMPENED2 96 7e-20
Os11g0571900 Targeting for Xklp2 family protein 94 3e-19
Os02g0200800 Targeting for Xklp2 family protein 91 1e-18
>Os11g0592600 Targeting for Xklp2 family protein
Length = 407
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/407 (80%), Positives = 329/407 (80%)
Query: 1 MGIEIVPQSFNEELDSTVTITPASDNIDVSDDTSVPHPSEVPATVNVVLVEQSDNSISEP 60
MGIEIVPQSFNEELDSTVTITPASDNIDVSDDTSVPHPSEVPATVNVVLVEQSDNSISEP
Sbjct: 1 MGIEIVPQSFNEELDSTVTITPASDNIDVSDDTSVPHPSEVPATVNVVLVEQSDNSISEP 60
Query: 61 LESDGANGATENVVPLASEKSTDNNDAMNSEPVNSEPYEASPANNAEKGDVMQQSDENNG 120
LESDGANGATENVVPLASEKSTDNNDAMNSEPVNSEPYEASPANNAEKGDVMQQSDENNG
Sbjct: 61 LESDGANGATENVVPLASEKSTDNNDAMNSEPVNSEPYEASPANNAEKGDVMQQSDENNG 120
Query: 121 DKQENQDLLSPMAETAGSDSTSVTSMEDVQEAKDAAPSETDDATGHPPDLSNDKACAGNG 180
DKQENQDLLSPMAETAGSDSTSVTSMEDVQEAKDAAPSETDDATGHPPDLSNDKACAGNG
Sbjct: 121 DKQENQDLLSPMAETAGSDSTSVTSMEDVQEAKDAAPSETDDATGHPPDLSNDKACAGNG 180
Query: 181 NGNVFQNAKCVLTTSTKKMKRSASATTRKSLQATNTDEGNASTLTNSKSSNGRTTTVPAG 240
NGNVFQNAKCVLTTSTKKMKRSASATTRKSLQATNTDEGNASTLTNSKSSNGRTTTVPAG
Sbjct: 181 NGNVFQNAKCVLTTSTKKMKRSASATTRKSLQATNTDEGNASTLTNSKSSNGRTTTVPAG 240
Query: 241 PVFRCTERAEKRREFYMKLEEKHXXXXXXXXXXXXXXXXXXXXXXXXXRKSLTFKATPMP 300
PVFRCTERAEKRREFYMKLEEKH RKSLTFKATPMP
Sbjct: 241 PVFRCTERAEKRREFYMKLEEKHQALEEEKIQLEAKLKKEQEEALKLLRKSLTFKATPMP 300
Query: 301 SFYHEAPSPKAEYKKLPTTRPKSPKLGRRKXXXXXXXXXXXXXXXXXPRPCCRASRXXXX 360
SFYHEAPSPKAEYKKLPTTRPKSPKLGRRK PRPCCRASR
Sbjct: 301 SFYHEAPSPKAEYKKLPTTRPKSPKLGRRKASTAADASNSSEESDSTPRPCCRASRDSLD 360
Query: 361 XXXXXXXXXRNGXXXXXXXXXXXXXXXXXXXXXXXLSDQSAMNIAVH 407
RNG LSDQSAMNIAVH
Sbjct: 361 SICKCSSSSRNGKPQQPATAKPAASKKQPKPHAHKLSDQSAMNIAVH 407
>Os06g0606800 Targeting for Xklp2 family protein
Length = 372
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 233 RTTTVPA-GPVFRCTERAEKRREFYMKLEEKHXXXXXXXXXXXXXXXXXXXXXXXXXRKS 291
R + PA G F+C ERAEKRREFY KLEEK RKS
Sbjct: 187 RVGSTPAYGFAFKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKS 246
Query: 292 LTFKATPMPSFYHEAPSPKAEYKKLPTTRPKSPKLGRRK 330
L F+A PMPSFY E P PK E KK+PTTR +SPKLGR K
Sbjct: 247 LNFRANPMPSFYKEPPPPKVELKKIPTTRARSPKLGRSK 285
>Os03g0799100 Similar to WAVE-DAMPENED2
Length = 359
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 232 GRT-TTVPAGPVFRCTERAEKRREFYMKLEEKHXXXXXXXXXXXXXXXXXXXXXXXXXRK 290
G+T TV P F C +RA+KR+EFY KLEEKH RK
Sbjct: 206 GKTKATVGVAPSFVCADRADKRKEFYTKLEEKHKALEAEKNEAEARKKEEQETALKQLRK 265
Query: 291 SLTFKATPMPSFYHEAPSPKAEYKKLPTTRPKSPKLGRRK 330
SL +A PMPSFY E P PKAE KK+P TR KSPK RR+
Sbjct: 266 SLVIRAKPMPSFYQEGPPPKAELKKVPPTRAKSPKFTRRR 305
>Os11g0571900 Targeting for Xklp2 family protein
Length = 430
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 240 GPVFRCTERAEKRREFYMKLEEKHXXXXXXXXXXXXXXXXXXXXXXXXXRKSLTFKATPM 299
G FR ERAEKR+EFY KLEEK RKSLTFKATPM
Sbjct: 207 GFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFKATPM 266
Query: 300 PSFYHEAPSPKAEYKKLPTTRPKSPKLGRRK 330
PSFY E P PK E KK+P TR +SPKLGR K
Sbjct: 267 PSFYKEQP-PKVELKKIPPTRARSPKLGRHK 296
>Os02g0200800 Targeting for Xklp2 family protein
Length = 334
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 51/91 (56%)
Query: 240 GPVFRCTERAEKRREFYMKLEEKHXXXXXXXXXXXXXXXXXXXXXXXXXRKSLTFKATPM 299
G F+C ERAEKR+EFY KLEEK RKSL FKATPM
Sbjct: 127 GFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPM 186
Query: 300 PSFYHEAPSPKAEYKKLPTTRPKSPKLGRRK 330
PSFY E PK E KK+P TR +SPKLGR K
Sbjct: 187 PSFYQEPTPPKVELKKIPPTRARSPKLGRSK 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.303 0.120 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,863,200
Number of extensions: 482894
Number of successful extensions: 1594
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1587
Number of HSP's successfully gapped: 5
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 157 (65.1 bits)