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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0592600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Targeting for Xklp2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.38 (0.0841) R2 : 0.564
β1 : -6.66 (0.312) R2dD : 0.48 R2D : 0.375
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.76 (0.384) R2dE : 0.0556 R2E : 0.0473
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.3 (1.54) R2dD*E : 0.0579 R2D*E : -0.0556
γ1 : -1.82 (0.179) R2dN8 : 0.135 R2N8 : -0.00065
σ : 1.55
deviance : 1111.34
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_____
C
peak time of C : --
E
wheather : wind
threshold : 3.1
memory length : 4451
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 4.27

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1084.46 1.55 5.38 -6.77 0.593 2.62 2.3 -11.1 -1.87 5.5 3.04 4417 5.08 4.19
1181.74 1.6 5.44 -6.21 0.663 2.63 1.72 -- -1.76 5.33 2.908 3050 6.08 3.4
1096.54 1.54 5.38 -6.75 0.613 2.62 -- -11.1 -1.87 4.78 3.036 4416 5.1 4.18
1189.77 1.61 5.46 -6.16 0.623 2.67 -- -- -1.76 4.63 2.911 3050 6.07 3.4
1111.34 1.55 5.38 -6.66 -- 2.76 -- -11.3 -1.82 -- 3.1 4451 5.03 4.27
1293.51 1.69 5.43 -6.63 0.647 -- 2.2 -- -1.66 5.39 -- -- -- --
1303.95 1.69 5.44 -6.63 0.674 -- -- -- -1.67 4.5 -- -- -- --
1204.16 1.62 5.4 -6 -- 2.51 -- -- -1.41 -- 3.5 4439 6.48 2.93
1960.8 2.06 5.41 -- 0.396 3.56 -- -- -0.909 5.43 4.5 13473 5.86 2.85
1328.21 1.7 5.45 -6.6 -- -- -- -- -1.65 -- -- -- -- --
2462.75 2.32 5.28 -- 0.551 -- -- -- -0.933 4.79 -- -- -- --
1756.86 1.95 5.43 -- -- 3.54 -- -- -0.444 -- 5.991 45594 5.48 2.84
2478.83 2.32 5.28 -- -- -- -- -- -0.921 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1074.42 wind 1.0 14400 < th dose independent rect. 24 3
3 1083.92 wind 1.0 14400 > th dose independent rect. 24 3
7 1090.44 wind 3.0 4320 > th dose independent rect. 5 4
10 1093.72 wind 3.0 4320 < th dose independent rect. 5 4
12 1095.78 wind 3.0 4320 < th dose independent rect. 23 11
14 1096.52 wind 3.0 4320 < th dose independent rect. 2 7
15 1096.97 wind 3.0 4320 > th dose independent rect. 24 10
19 1097.64 wind 5.0 4320 < th dose dependent rect. 5 4
23 1098.50 wind 3.0 4320 > th dose independent rect. 8 1
27 1098.98 wind 3.0 4320 > th dose independent rect. 21 13
33 1100.26 wind 3.0 4320 < th dose independent rect. 21 13
39 1101.72 wind 5.0 4320 < th dose dependent rect. 23 11
47 1103.76 wind 5.0 4320 < th dose dependent rect. 2 7
54 1104.30 wind 1.0 4320 > th dose dependent rect. 5 4
61 1105.39 wind 5.0 4320 < th dose dependent rect. 6 1
64 1105.46 wind 1.0 14400 < th dose independent rect. 13 19
77 1106.95 wind 3.0 4320 < th dose independent rect. 8 1
85 1107.73 wind 9.0 4320 < th dose dependent rect. 6 1
114 1112.49 wind 1.0 14400 < th dose dependent rect. 1 3
115 1112.59 wind 1.0 14400 < th dose dependent rect. 13 19
118 1112.79 wind 1.0 14400 > th dose independent rect. 13 19
128 1114.09 wind 1.0 4320 > th dose dependent rect. 6 1
135 1114.76 wind 3.0 4320 < th dose independent sin 8 NA
151 1115.98 wind 1.0 14400 < th dose independent rect. 13 15
161 1116.50 wind 1.0 14400 < th dose independent sin 12 NA
171 1117.22 wind 3.0 4320 > th dose independent sin 8 NA
172 1117.22 wind 5.0 14400 < th dose dependent rect. 22 2
197 1118.72 wind 3.0 14400 < th dose independent rect. 22 2
207 1119.35 wind 1.0 4320 > th dose dependent rect. 23 11
235 1120.66 wind 3.0 14400 > th dose independent rect. 22 2
245 1121.60 wind 1.0 4320 > th dose dependent rect. 8 1
250 1121.84 wind 1.0 4320 > th dose dependent rect. 1 9
293 1123.57 wind 1.0 14400 > th dose independent rect. 13 15
318 1124.74 humidity 90.0 14400 < th dose independent rect. 3 2
357 1126.62 wind 1.0 14400 < th dose dependent rect. 5 23
363 1126.81 wind 1.0 14400 > th dose independent sin 12 NA
365 1126.87 wind 1.0 14400 < th dose dependent rect. 1 23
412 1129.23 wind 1.0 14400 < th dose dependent rect. 1 20
417 1129.45 wind 1.0 14400 < th dose dependent rect. 1 17
420 1129.57 wind 1.0 14400 < th dose dependent rect. 22 20
421 1129.59 wind 5.0 4320 < th dose dependent sin 8 NA
446 1130.65 wind 1.0 14400 > th dose dependent rect. 22 2
449 1130.76 wind 1.0 14400 > th dose independent rect. 1 1
500 1132.61 atmosphere 995.0 43200 > th dose independent rect. 18 16
561 1134.47 atmosphere 995.0 43200 < th dose independent rect. 18 16
562 1134.48 atmosphere 995.0 43200 > th dose independent sin 9 NA
609 1135.71 atmosphere 995.0 43200 < th dose independent sin 9 NA
611 1135.72 humidity 80.0 14400 > th dose dependent rect. 3 2
674 1137.35 wind 1.0 14400 < th dose dependent no NA NA
699 1138.00 wind 1.0 14400 < th dose dependent rect. 16 23
705 1138.12 atmosphere 995.0 43200 < th dose dependent sin 15 NA
739 1138.62 wind 1.0 14400 < th dose independent rect. 22 20
761 1139.14 atmosphere 995.0 43200 < th dose dependent sin 12 NA
797 1139.80 wind 1.0 14400 < th dose independent rect. 5 23
847 1140.72 humidity 50.0 14400 > th dose dependent rect. 3 1
873 1141.27 wind 1.0 14400 < th dose independent rect. 20 22
891 1141.72 wind 1.0 14400 < th dose independent rect. 1 17
909 1141.94 wind 1.0 14400 < th dose independent rect. 1 23
913 1141.98 wind 1.0 14400 < th dose independent rect. 22 23
962 1142.64 atmosphere 995.0 43200 < th dose dependent rect. 13 19
985 1142.93 wind 1.0 14400 < th dose independent rect. 1 20
993 1143.06 precipitation 0.1 14400 < th dose independent rect. 11 2
995 1143.06 precipitation 0.1 14400 < th dose dependent rect. 11 2
999 1143.10 atmosphere 995.0 43200 < th dose dependent rect. 13 17