Os06g0606800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Targeting for Xklp2 family protein.
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Os06g0606800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Targeting for Xklp2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.06 | 0.266 | 11.6 | -0.935 | 0.455 | 1.5 | -0.599 | -2.17 | 0.249 | 5.67 | 20.7 | 5413 | -- | -- |
| 33.64 | 0.27 | 11.6 | -0.556 | 0.468 | 1.69 | -0.631 | -- | 0.204 | 5.6 | 16.68 | 8103 | -- | -- |
| 32.9 | 0.267 | 11.6 | -0.951 | 0.45 | 1.5 | -- | -2.2 | 0.242 | 5.48 | 20.72 | 5458 | -- | -- |
| 34.57 | 0.274 | 11.6 | -0.557 | 0.466 | 1.69 | -- | -- | 0.207 | 5.47 | 16.67 | 8101 | -- | -- |
| 42.99 | 0.305 | 11.6 | -0.936 | -- | 1.52 | -- | -2.12 | 0.244 | -- | 20.7 | 5550 | -- | -- |
| 94.66 | 0.456 | 11.4 | 0.379 | 0.503 | -- | -0.461 | -- | 0.755 | 4.93 | -- | -- | -- | -- |
| 95.17 | 0.457 | 11.4 | 0.38 | 0.499 | -- | -- | -- | 0.757 | 4.76 | -- | -- | -- | -- |
| 43.7 | 0.308 | 11.5 | -0.483 | -- | 1.69 | -- | -- | 0.364 | -- | 16.92 | 5560 | -- | -- |
| 38.16 | 0.288 | 11.5 | -- | 0.443 | 1.38 | -- | -- | 0.465 | 5.44 | 18.88 | 5448 | -- | -- |
| 108.38 | 0.486 | 11.5 | 0.399 | -- | -- | -- | -- | 0.77 | -- | -- | -- | -- | -- |
| 98.97 | 0.465 | 11.5 | -- | 0.506 | -- | -- | -- | 0.714 | 4.74 | -- | -- | -- | -- |
| 45.59 | 0.314 | 11.5 | -- | -- | 1.51 | -- | -- | 0.459 | -- | 17.12 | 2716 | -- | -- |
| 112.57 | 0.495 | 11.5 | -- | -- | -- | -- | -- | 0.726 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.60 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 26.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 12 | 26.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 13 | 26.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 21 | 26.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 28 | 26.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 34 | 27.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 55 | 28.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 61 | 28.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 62 | 28.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 63 | 28.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 68 | 28.53 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 80 | 28.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 99 | 28.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 19 |
| 119 | 28.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 121 | 28.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 132 | 28.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 134 | 28.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 144 | 28.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 184 | 29.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 22 |
| 188 | 29.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 247 | 29.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 275 | 29.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 294 | 29.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 297 | 29.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 333 | 29.37 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 372 | 29.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 378 | 29.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 389 | 29.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 405 | 29.59 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 408 | 29.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 415 | 29.60 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 419 | 29.61 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 427 | 29.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 431 | 29.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 501 | 29.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 502 | 29.88 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 519 | 29.91 | humidity | 90 | 43200 | > th | dose dependent | sin | 4 | NA |
| 557 | 29.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 561 | 29.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 569 | 29.98 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 626 | 30.12 | humidity | 90 | 43200 | > th | dose independent | sin | 18 | NA |
| 628 | 30.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 21 |
| 634 | 30.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 761 | 30.34 | humidity | 90 | 43200 | < th | dose independent | sin | 18 | NA |
| 825 | 30.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 826 | 30.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 870 | 30.46 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 896 | 30.48 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 992 | 30.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |