BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0606800 Os06g0606800|AK066355
(372 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32330.1 | chr4:15609801-15611867 FORWARD LENGTH=438 166 2e-41
AT2G25480.1 | chr2:10843449-10845343 FORWARD LENGTH=404 162 4e-40
AT2G35880.1 | chr2:15063204-15065259 REVERSE LENGTH=433 122 4e-28
AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479 98 7e-21
AT3G23090.1 | chr3:8214533-8216983 REVERSE LENGTH=339 92 5e-19
AT5G28646.1 | chr5:10675192-10676151 FORWARD LENGTH=203 77 1e-14
AT3G04630.1 | chr3:1259231-1260652 FORWARD LENGTH=288 76 3e-14
AT1G54460.1 | chr1:20340907-20342900 REVERSE LENGTH=339 70 2e-12
>AT4G32330.1 | chr4:15609801-15611867 FORWARD LENGTH=438
Length = 437
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 127/201 (63%), Gaps = 12/201 (5%)
Query: 150 SQSLEDSKEKKKTQKTSNQCSVKNDEEEPNCEKV---KPQRVGSTPAYGFAFKCDERAEK 206
++S + K K K+QK + ++D + N K KP++VG+ P YGF+FKCD+RAEK
Sbjct: 158 AESADGEKVKPKSQKKQAHETSEDDTQSSNSPKADDGKPRKVGALPNYGFSFKCDQRAEK 217
Query: 207 RREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSLNFRANPMPSFYXXXXXXXX 266
R+EFY KLEEK HA+E E ++MQAKSKET+EAEL+ LRKSLNF+A PMPSFY
Sbjct: 218 RKEFYVKLEEKTHAKEEEINSMQAKSKETQEAELRMLRKSLNFKATPMPSFYQEPQPPKT 277
Query: 267 XXXXXXTTRARSPKLGRSKNXXXXXXXXXXXXXXRPARLSLDERASQN-----GVKKVPA 321
TR +SPKLGR K R RLSLDERAS++ G+ +P
Sbjct: 278 ELKKIPPTRPKSPKLGRKKT--ASGADSEETQTPRLGRLSLDERASKDNPTAKGI--MPT 333
Query: 322 ANTVRKPQRKSLPKLPSEQTV 342
+ ++P RKSLP+LPS++TV
Sbjct: 334 VDLKKQPVRKSLPRLPSQKTV 354
>AT2G25480.1 | chr2:10843449-10845343 FORWARD LENGTH=404
Length = 403
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 122/193 (63%), Gaps = 5/193 (2%)
Query: 154 EDSKEKKKTQKTSNQC--SVKNDEEEPNCEKVKPQRVGSTPAYGFAFKCDERAEKRREFY 211
E +++K K ++T Q + ++D + P + KP+R + P YGF+F+CD+RAEKRREFY
Sbjct: 138 EGTRDKPKLRETRKQVNDTSEDDTQYPKEDDGKPRRASALPNYGFSFRCDQRAEKRREFY 197
Query: 212 SKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSLNFRANPMPSFYXXXXXXXXXXXXX 271
SKLEEKIHA+E EK+ +QAKSKET+EAELK LRKSLNF+A PMP+FY
Sbjct: 198 SKLEEKIHAKEEEKNTVQAKSKETQEAELKMLRKSLNFKATPMPTFYQEPQLPKTELKKI 257
Query: 272 XTTRARSPKLGRSK-NXXXXXXXXXXXXXXRPARLSLDERASQNG--VKKVPAANTVRKP 328
TR +SPKLGR K N R RLSLDE+ ++ V+ T + P
Sbjct: 258 AITRPKSPKLGRKKTNSRADSEEAITIQTPRFGRLSLDEKTPKDNPVVEGSVPGETKKPP 317
Query: 329 QRKSLPKLPSEQT 341
RKSLP+LPSE+T
Sbjct: 318 VRKSLPRLPSEKT 330
>AT2G35880.1 | chr2:15063204-15065259 REVERSE LENGTH=433
Length = 432
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 91/149 (61%), Gaps = 18/149 (12%)
Query: 188 VGSTPAYGFAFKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSL 247
VGS A GF+F+ +ERAEKR+EFY KLEEKIHA+E+EK+N+QAKSKE++E E+K+LRKSL
Sbjct: 240 VGS--ASGFSFRLEERAEKRKEFYMKLEEKIHAKEVEKTNLQAKSKESQEEEIKRLRKSL 297
Query: 248 NFRANPMPSFYXXXXXXXXXXXXXXTTRARSPKLGRSKNXXXXXXXXXXXXXXRPARLSL 307
F+A PMPSFY TTR +SPKLGR K+ +P
Sbjct: 298 TFKAGPMPSFY-KEPPPKVELKKIPTTRPKSPKLGRRKSSSDATGGEAAPRVTKP----- 351
Query: 308 DERASQNGVKKVPAANTVRKPQRKSLPKL 336
K +++TV+KP KS PKL
Sbjct: 352 ----------KDSSSSTVKKPITKSQPKL 370
>AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479
Length = 478
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 190 STPAYGFAFKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSLNF 249
ST + F FKC ERAEKR+EFY KLEEKIHA++ E + +QAK+++ EAE+K+ RKSLNF
Sbjct: 322 STGSTSFRFKCSERAEKRKEFYMKLEEKIHAKKTETNQVQAKTQQKAEAEIKQFRKSLNF 381
Query: 250 RANPMPSFY 258
+A PMPSFY
Sbjct: 382 KATPMPSFY 390
>AT3G23090.1 | chr3:8214533-8216983 REVERSE LENGTH=339
Length = 338
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%)
Query: 197 AFKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSLNFRANPMPS 256
+F+ ERAEKR+EFY+KLEEK A E EK+ +A++KE EA L++LRKSL F+ANPMP
Sbjct: 195 SFRSTERAEKRKEFYTKLEEKHQAMEAEKTQSEARNKEATEAALRQLRKSLRFKANPMPK 254
Query: 257 FYXXXXXXXXXXXXXXTTRARSPKLGR 283
FY TRA+SPKLGR
Sbjct: 255 FYHEGPPPKVELKKPLPTRAKSPKLGR 281
>AT5G28646.1 | chr5:10675192-10676151 FORWARD LENGTH=203
Length = 202
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 165 TSNQCSVKNDEEEPNCEKVKPQR-VGSTPAYGFA--FKCDERAEKRREFYSKLEEKIHAQ 221
T N KN +EE +C + S +G A F+ +RAEKR+E+Y KLEEK A
Sbjct: 53 TENDSKKKNLDEEDDCSVASSMKNAKSKVTHGTAPRFRSAQRAEKRKEYYQKLEEKHQAL 112
Query: 222 ELEKSNMQAKSKETEEAELKKLRKSLNFRANPMPSFYXXXXXXXXXXXXXXTTRARSPKL 281
E E+ ++ + KE +EA +K+LRK+L F+ANP+P FY TR +SPKL
Sbjct: 113 EAERIELEQRQKEEQEAAIKQLRKNLKFKANPVPDFYYQRPPVKPELKKFPLTRPKSPKL 172
Query: 282 GRSK 285
S+
Sbjct: 173 NLSR 176
>AT3G04630.1 | chr3:1259231-1260652 FORWARD LENGTH=288
Length = 287
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 187 RVG-STPAYGFA--FKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKL 243
R+G S YG A F+ +RAEKR+E+Y KLEEK A E E++ ++ + K+ +EA LK+L
Sbjct: 115 RMGKSGLTYGSAPTFRSAQRAEKRKEYYQKLEEKNQALEAERNELEQRQKDEQEAALKQL 174
Query: 244 RKSLNFRANPMPSFYXXXXXXXXXXXXXXTTRARSPKLGRSK 285
RK+L F+A P+P+FY TR +SPKL S+
Sbjct: 175 RKNLKFKAKPVPNFYYEAPPAKPELKKLPLTRPKSPKLILSR 216
>AT1G54460.1 | chr1:20340907-20342900 REVERSE LENGTH=339
Length = 338
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 188 VGSTPAYGFAFKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSL 247
+G P F R E+RREFY KLEEK A E EK + + KE +EA K+LRK++
Sbjct: 161 IGVAPT----FSSTSRLERRREFYQKLEEKQKALEAEKRENEKRLKEEQEAVTKQLRKNM 216
Query: 248 NFRANPMPSFYXXXXXXXXXXXXXXTTRARSPKLGRSK 285
++ANP+PSFY TR +SP L R K
Sbjct: 217 AYKANPVPSFYQEGPPPKQPLKKFPLTRPKSPNLNRRK 254
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.303 0.121 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,520,720
Number of extensions: 316187
Number of successful extensions: 1585
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1587
Number of HSP's successfully gapped: 12
Length of query: 372
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,364,969
Effective search space: 2275271568
Effective search space used: 2275271568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 112 (47.8 bits)