Os02g0200800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Targeting for Xklp2 family protein.
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Os02g0200800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Targeting for Xklp2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.63 | 0.43 | 8.99 | -0.718 | 1.14 | 0.829 | 0.653 | -0.725 | 0.305 | 1.21 | 1009 | 6746 | -- | -- |
| 84.27 | 0.428 | 8.98 | -0.558 | 1.15 | 0.85 | 0.624 | -- | 0.362 | 1.25 | 1008 | 7294 | -- | -- |
| 84.65 | 0.429 | 8.98 | -0.721 | 1.12 | 0.825 | -- | -0.784 | 0.359 | 1.22 | 1008 | 6939 | -- | -- |
| 85.76 | 0.431 | 8.96 | -0.552 | 1.14 | 0.845 | -- | -- | 0.383 | 1.24 | 1008 | 7128 | -- | -- |
| 164.93 | 0.598 | 8.97 | -0.608 | -- | 0.841 | -- | -0.502 | 0.388 | -- | 1008 | 6589 | -- | -- |
| 107.09 | 0.485 | 8.96 | -0.274 | 1.16 | -- | 0.734 | -- | 0.352 | 1.28 | -- | -- | -- | -- |
| 109.3 | 0.49 | 8.97 | -0.3 | 1.16 | -- | -- | -- | 0.348 | 1.32 | -- | -- | -- | -- |
| 165.19 | 0.599 | 8.95 | -0.541 | -- | 0.916 | -- | -- | 0.433 | -- | 1008 | 6622 | -- | -- |
| 92.32 | 0.447 | 8.94 | -- | 1.13 | 0.702 | -- | -- | 0.466 | 1.25 | 1008 | 7398 | -- | -- |
| 192.3 | 0.648 | 8.95 | -0.254 | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
| 111.67 | 0.494 | 8.96 | -- | 1.15 | -- | -- | -- | 0.381 | 1.31 | -- | -- | -- | -- |
| 170.92 | 0.609 | 8.93 | -- | -- | 0.737 | -- | -- | 0.472 | -- | 1008 | 8085 | -- | -- |
| 194 | 0.65 | 8.94 | -- | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.22 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 3 | 72.42 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 6 | 72.57 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 11 | 72.73 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 14 | 72.87 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 29 | 77.63 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 30 | 78.25 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 31 | 78.26 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 32 | 78.28 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 33 | 78.29 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 44 | 78.58 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 57 | 78.59 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 58 | 78.64 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 62 | 78.71 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 64 | 78.79 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 73 | 78.90 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 77 | 78.95 | wind | 3 | 43200 | > th | dose dependent | sin | 2 | NA |
| 81 | 78.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 85 | 78.99 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 88 | 79.02 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 109 | 79.08 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 124 | 79.19 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 127 | 79.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 135 | 79.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 150 | 79.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 153 | 79.32 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 185 | 79.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 194 | 79.43 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 197 | 79.44 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 202 | 79.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 207 | 79.46 | radiation | 30 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 211 | 79.47 | radiation | 30 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 212 | 79.47 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 234 | 79.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 241 | 79.56 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 246 | 79.57 | radiation | 30 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 252 | 79.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 265 | 79.63 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 278 | 79.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 279 | 79.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 306 | 79.70 | wind | 9 | 43200 | < th | dose dependent | sin | 3 | NA |
| 331 | 79.75 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 436 | 80.00 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 484 | 80.07 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 515 | 80.12 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 527 | 80.13 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 542 | 80.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 543 | 80.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 544 | 80.16 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 561 | 80.16 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 577 | 80.18 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 616 | 80.24 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 617 | 80.24 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 630 | 80.26 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 654 | 80.30 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 789 | 80.47 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 871 | 80.60 | wind | 3 | 43200 | > th | dose independent | sin | 5 | NA |
| 904 | 80.63 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 2 |