BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0200800 Os02g0200800|AB118005
(334 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32330.1 | chr4:15609801-15611867 FORWARD LENGTH=438 208 3e-54
AT2G25480.1 | chr2:10843449-10845343 FORWARD LENGTH=404 189 1e-48
AT2G35880.1 | chr2:15063204-15065259 REVERSE LENGTH=433 151 4e-37
AT3G23090.1 | chr3:8214533-8216983 REVERSE LENGTH=339 111 5e-25
AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479 105 5e-23
AT3G04630.1 | chr3:1259231-1260652 FORWARD LENGTH=288 96 2e-20
AT5G28646.1 | chr5:10675192-10676151 FORWARD LENGTH=203 94 9e-20
AT1G54460.1 | chr1:20340907-20342900 REVERSE LENGTH=339 86 3e-17
>AT4G32330.1 | chr4:15609801-15611867 FORWARD LENGTH=438
Length = 437
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/177 (63%), Positives = 134/177 (75%), Gaps = 10/177 (5%)
Query: 103 QNSSVKKDDESNPESRKAGGTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQA 162
Q+S+ K D+ P RK G P YGFSFKCD+RAEKRKEFY KLEEK HA+E EI+++QA
Sbjct: 184 QSSNSPKADDGKP--RKVGALPNYGFSFKCDQRAEKRKEFYVKLEEKTHAKEEEINSMQA 241
Query: 163 KSKETEEAELKMLRKSLNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAG 222
KSKET+EAEL+MLRKSLNFKATPMPSFYQEP PPK ELKKIPPTR +SPKLGR K S
Sbjct: 242 KSKETQEAELRMLRKSLNFKATPMPSFYQEPQPPKTELKKIPPTRPKSPKLGRKKTASGA 301
Query: 223 ETEETVTPPGRPVRLSLDSLDEKVSQNG--VKKANPSNAVKK-PQRKSLPKLPSEET 276
++EET TP RL SLDE+ S++ K P+ +KK P RKSLP+LPS++T
Sbjct: 302 DSEETQTP-----RLGRLSLDERASKDNPTAKGIMPTVDLKKQPVRKSLPRLPSQKT 353
>AT2G25480.1 | chr2:10843449-10845343 FORWARD LENGTH=404
Length = 403
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 140/208 (67%), Gaps = 20/208 (9%)
Query: 71 RNKAEKQEPRSSTKETSLEDSKEKRKTQKPLGQNSSVKKDDESNPESRKAGGTPAYGFSF 130
R+K + +E R +TS +D TQ P K+D+ P R+A P YGFSF
Sbjct: 141 RDKPKLRETRKQVNDTSEDD------TQYP--------KEDDGKP--RRASALPNYGFSF 184
Query: 131 KCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPMPSFY 190
+CD+RAEKR+EFYSKLEEKIHA+E E + +QAKSKET+EAELKMLRKSLNFKATPMP+FY
Sbjct: 185 RCDQRAEKRREFYSKLEEKIHAKEEEKNTVQAKSKETQEAELKMLRKSLNFKATPMPTFY 244
Query: 191 QEPTPPKVELKKIPPTRARSPKLGRSKNKSAGETEETVTPPGRPVRLSLDSLDEKVSQNG 250
QEP PK ELKKI TR +SPKLGR K S ++EE +T + R SLDEK ++
Sbjct: 245 QEPQLPKTELKKIAITRPKSPKLGRKKTNSRADSEEAITI--QTPRFGRLSLDEKTPKDN 302
Query: 251 --VKKANPSNAVKKPQRKSLPKLPSEET 276
V+ + P K P RKSLP+LPSE+T
Sbjct: 303 PVVEGSVPGETKKPPVRKSLPRLPSEKT 330
>AT2G35880.1 | chr2:15063204-15065259 REVERSE LENGTH=433
Length = 432
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 105/160 (65%), Gaps = 25/160 (15%)
Query: 115 PESRKAGGTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKM 174
P R++ A GFSF+ +ERAEKRKEFY KLEEKIHA+E+E +NLQAKSKE++E E+K
Sbjct: 233 PRGRRSSVGSASGFSFRLEERAEKRKEFYMKLEEKIHAKEVEKTNLQAKSKESQEEEIKR 292
Query: 175 LRKSLNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKS---AGETEETVTPP 231
LRKSL FKA PMPSFY+EP PPKVELKKIP TR +SPKLGR K+ S GE VT P
Sbjct: 293 LRKSLTFKAGPMPSFYKEP-PPKVELKKIPTTRPKSPKLGRRKSSSDATGGEAAPRVTKP 351
Query: 232 GRPVRLSLDSLDEKVSQNGVKKANPSNAVKKPQRKSLPKL 271
K + S+ VKKP KS PKL
Sbjct: 352 ---------------------KDSSSSTVKKPITKSQPKL 370
>AT3G23090.1 | chr3:8214533-8216983 REVERSE LENGTH=339
Length = 338
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 66/87 (75%)
Query: 129 SFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPMPS 188
SF+ ERAEKRKEFY+KLEEK A E E + +A++KE EA L+ LRKSL FKA PMP
Sbjct: 195 SFRSTERAEKRKEFYTKLEEKHQAMEAEKTQSEARNKEATEAALRQLRKSLRFKANPMPK 254
Query: 189 FYQEPTPPKVELKKIPPTRARSPKLGR 215
FY E PPKVELKK PTRA+SPKLGR
Sbjct: 255 FYHEGPPPKVELKKPLPTRAKSPKLGR 281
>AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479
Length = 478
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 39 TPSSTLSKAPV----ARVSHADS-------------STGSKINGDSSVDRNKAEKQEPRS 81
TPSS+++ P+ RV+ A + + GS ++ +S + + ++E R
Sbjct: 226 TPSSSVNVKPIIPNDVRVTKASTKGHDVTPKAASRRTKGSSLSSNSKTNVDAKSQKELRP 285
Query: 82 STKETSLEDSKEKRKTQKPLGQNSSVKKDDESNPESRKAGGTPAYGFSFKCDERAEKRKE 141
S S K +T+ P+ N + S S+ T + F FKC ERAEKRKE
Sbjct: 286 KKTIESQPKSSNKTETRPPIATN----RCKTSTTSSKLEMSTGSTSFRFKCSERAEKRKE 341
Query: 142 FYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPMPSFYQEPTPP----K 197
FY KLEEKIHA++ E + +QAK+++ EAE+K RKSLNFKATPMPSFY T P K
Sbjct: 342 FYMKLEEKIHAKKTETNQVQAKTQQKAEAEIKQFRKSLNFKATPMPSFYNIGTRPVSHNK 401
Query: 198 VELKKIPPTRAR 209
E K+ +R+R
Sbjct: 402 TEPSKVAQSRSR 413
>AT3G04630.1 | chr3:1259231-1260652 FORWARD LENGTH=288
Length = 287
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 69/101 (68%)
Query: 119 KAGGTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKS 178
K+G T +F+ +RAEKRKE+Y KLEEK A E E + L+ + K+ +EA LK LRK+
Sbjct: 118 KSGLTYGSAPTFRSAQRAEKRKEYYQKLEEKNQALEAERNELEQRQKDEQEAALKQLRKN 177
Query: 179 LNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNK 219
L FKA P+P+FY E P K ELKK+P TR +SPKL S+ K
Sbjct: 178 LKFKAKPVPNFYYEAPPAKPELKKLPLTRPKSPKLILSRRK 218
>AT5G28646.1 | chr5:10675192-10676151 FORWARD LENGTH=203
Length = 202
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 92/160 (57%), Gaps = 13/160 (8%)
Query: 74 AEKQ--EPRSSTKETSLEDSKEKRKTQKPLGQNSSVKK-----DDESNPESRK-AGGTPA 125
AE+Q E + T+E SL + K+ + +N S KK DD S S K A
Sbjct: 26 AEEQDYEEKECTEENSL---SQNHKSSNVITENDSKKKNLDEEDDCSVASSMKNAKSKVT 82
Query: 126 YGFS--FKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKA 183
+G + F+ +RAEKRKE+Y KLEEK A E E L+ + KE +EA +K LRK+L FKA
Sbjct: 83 HGTAPRFRSAQRAEKRKEYYQKLEEKHQALEAERIELEQRQKEEQEAAIKQLRKNLKFKA 142
Query: 184 TPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAGE 223
P+P FY + P K ELKK P TR +SPKL S+ KS +
Sbjct: 143 NPVPDFYYQRPPVKPELKKFPLTRPKSPKLNLSRRKSCSD 182
>AT1G54460.1 | chr1:20340907-20342900 REVERSE LENGTH=339
Length = 338
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 95/179 (53%), Gaps = 17/179 (9%)
Query: 129 SFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPMPS 188
+F R E+R+EFY KLEEK A E E + + KE +EA K LRK++ +KA P+PS
Sbjct: 166 TFSSTSRLERRREFYQKLEEKQKALEAEKRENEKRLKEEQEAVTKQLRKNMAYKANPVPS 225
Query: 189 FYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAGETEETVTPPGRPV--------RLSLD 240
FYQE PPK LKK P TR +SP L R K+ S +TV + V R S+
Sbjct: 226 FYQEGPPPKQPLKKFPLTRPKSPNLNRRKSCS-----DTVNASYQEVKGKHCARHRHSVG 280
Query: 241 SLDEKVSQNGVKKANPSNAVKKPQRKSLPKLP-SEETGP-FDSSHLKNT-ELSTGNIQE 296
++V N V + P+++ K RKS P SEE F+S H T E G ++E
Sbjct: 281 GCKDEVKTNSVPRT-PNSSSKDQMRKSKKGTPKSEEVHEMFNSGHDGETGENGVGVVEE 338
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.301 0.121 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,569,953
Number of extensions: 347035
Number of successful extensions: 2604
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2614
Number of HSP's successfully gapped: 15
Length of query: 334
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,392,385
Effective search space: 1972210475
Effective search space used: 1972210475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 112 (47.8 bits)