BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0200800 Os02g0200800|AB118005
(334 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0200800 Targeting for Xklp2 family protein 633 0.0
Os06g0606800 Targeting for Xklp2 family protein 307 6e-84
Os11g0571900 Targeting for Xklp2 family protein 158 5e-39
Os11g0592600 Targeting for Xklp2 family protein 122 4e-28
Os03g0799100 Similar to WAVE-DAMPENED2 111 6e-25
>Os02g0200800 Targeting for Xklp2 family protein
Length = 334
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/334 (95%), Positives = 319/334 (95%)
Query: 1 SHLDGKKPRPAKATQSHGPKVVKSRSPKSGGEGQARRSTPSSTLSKAPVARVSHADSSTG 60
SHLDGKKPRPAKATQSHGPKVVKSRSPKSGGEGQARRSTPSSTLSKAPVARVSHADSSTG
Sbjct: 1 SHLDGKKPRPAKATQSHGPKVVKSRSPKSGGEGQARRSTPSSTLSKAPVARVSHADSSTG 60
Query: 61 SKINGDSSVDRNKAEKQEPRSSTKETSLEDSKEKRKTQKPLGQNSSVKKDDESNPESRKA 120
SKINGDSSVDRNKAEKQEPRSSTKETSLEDSKEKRKTQKPLGQNSSVKKDDESNPESRKA
Sbjct: 61 SKINGDSSVDRNKAEKQEPRSSTKETSLEDSKEKRKTQKPLGQNSSVKKDDESNPESRKA 120
Query: 121 GGTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLN 180
GGTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLN
Sbjct: 121 GGTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLN 180
Query: 181 FKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAGETEETVTPPGRPVRLSLD 240
FKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAGETEETVTPPGRPVRLSLD
Sbjct: 181 FKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAGETEETVTPPGRPVRLSLD 240
Query: 241 SLDEKVSQNGVKKANPSNAVKKPQRKSLPKLPSEETGPFDSSHLKNTELSTGNIQESGST 300
SLDEKVSQNGVKKANPSNAVKKPQRKSLPKLPSEETGPFDSSHLKNTELSTGNIQESGST
Sbjct: 241 SLDEKVSQNGVKKANPSNAVKKPQRKSLPKLPSEETGPFDSSHLKNTELSTGNIQESGST 300
Query: 301 TPNXXXXXXXXXXXXXXXDRIATGGQELDEQIIA 334
TPN DRIATGGQELDEQIIA
Sbjct: 301 TPNQQETESNTSISESIQDRIATGGQELDEQIIA 334
>Os06g0606800 Targeting for Xklp2 family protein
Length = 372
Score = 307 bits (787), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 174/277 (62%), Positives = 204/277 (73%), Gaps = 12/277 (4%)
Query: 7 KPRPAKATQSHGPKVV---KSRSPKSGGEGQARRSTPSSTLSKAPVARVSHADSSTGSKI 63
KPR +K +QSH PKV + +SP+SG + QAR+++P ST KAP+ARVS D S
Sbjct: 70 KPRVSKGSQSHSPKVTTKSQRQSPRSGDKSQARKNSPGSTYPKAPIARVSDPDLVDSSSC 129
Query: 64 NGDSSVDRNKAEKQEPRSSTKET-SLEDSKEKRKTQKPLGQNSSVKKDDESNPES---RK 119
N D KAEK R + + SLEDSKEK+KTQK Q S ++E N E ++
Sbjct: 130 N--DGADIKKAEKSSFRPVARASQSLEDSKEKKKTQKTSNQCSVKNDEEEPNCEKVKPQR 187
Query: 120 AGGTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSL 179
G TPAYGF+FKCDERAEKR+EFYSKLEEKIHA+E+E SN+QAKSKETEEAELK LRKSL
Sbjct: 188 VGSTPAYGFAFKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSL 247
Query: 180 NFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAGETEETVTPPGRPVRLSL 239
NF+A PMPSFY+EP PPKVELKKIP TRARSPKLGRSKN S+ TEE+ P RP RL
Sbjct: 248 NFRANPMPSFYKEPPPPKVELKKIPTTRARSPKLGRSKNTSSVSTEESTVPSSRPARL-- 305
Query: 240 DSLDEKVSQNGVKKANPSNAVKKPQRKSLPKLPSEET 276
SLDE+ SQNGVKK +N V+KPQRKSLPKLPSE+T
Sbjct: 306 -SLDERASQNGVKKVPAANTVRKPQRKSLPKLPSEQT 341
>Os11g0571900 Targeting for Xklp2 family protein
Length = 430
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 108/151 (71%), Gaps = 9/151 (5%)
Query: 127 GFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPM 186
GFSF+ ERAEKRKEFY KLEEKIHA+E+E +NLQAKSKE++EAE+K+LRKSL FKATPM
Sbjct: 207 GFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFKATPM 266
Query: 187 PSFYQEPTPPKVELKKIPPTRARSPKLGRSK--NKSAGETEETVTPPGRPVRLS-LDSLD 243
PSFY+E PPKVELKKIPPTRARSPKLGR K N +A + + P ++ L L
Sbjct: 267 PSFYKE-QPPKVELKKIPPTRARSPKLGRHKPTNSAAAASVDGSVSCESPRSITNLAKLT 325
Query: 244 EKVSQNGVKKANPSNAVKKPQRKSLPKLPSE 274
E N P +KP ++S+ K+PS+
Sbjct: 326 ESTENN-----KPHATARKPAQRSVTKIPSQ 351
>Os11g0592600 Targeting for Xklp2 family protein
Length = 407
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 81/121 (66%), Gaps = 4/121 (3%)
Query: 127 GFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPM 186
G F+C ERAEKR+EFY KLEEK A E E L+AK K+ +E LK+LRKSL FKATPM
Sbjct: 240 GPVFRCTERAEKRREFYMKLEEKHQALEEEKIQLEAKLKKEQEEALKLLRKSLTFKATPM 299
Query: 187 PSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKSAGE----TEETVTPPGRPVRLSLDSL 242
PSFY E PK E KK+P TR +SPKLGR K +A + +EE+ + P R S DSL
Sbjct: 300 PSFYHEAPSPKAEYKKLPTTRPKSPKLGRRKASTAADASNSSEESDSTPRPCCRASRDSL 359
Query: 243 D 243
D
Sbjct: 360 D 360
>Os03g0799100 Similar to WAVE-DAMPENED2
Length = 359
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 68/92 (73%)
Query: 129 SFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPMPS 188
SF C +RA+KRKEFY+KLEEK A E E + +A+ KE +E LK LRKSL +A PMPS
Sbjct: 217 SFVCADRADKRKEFYTKLEEKHKALEAEKNEAEARKKEEQETALKQLRKSLVIRAKPMPS 276
Query: 189 FYQEPTPPKVELKKIPPTRARSPKLGRSKNKS 220
FYQE PPK ELKK+PPTRA+SPK R ++ S
Sbjct: 277 FYQEGPPPKAELKKVPPTRAKSPKFTRRRSCS 308
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.301 0.121 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,122,851
Number of extensions: 547423
Number of successful extensions: 2863
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2857
Number of HSP's successfully gapped: 5
Length of query: 334
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 233
Effective length of database: 11,762,187
Effective search space: 2740589571
Effective search space used: 2740589571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 156 (64.7 bits)