BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0571900 Os11g0571900|AK073940
(430 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0571900 Targeting for Xklp2 family protein 596 e-170
Os02g0200800 Targeting for Xklp2 family protein 155 8e-38
Os06g0606800 Targeting for Xklp2 family protein 152 4e-37
Os11g0592600 Targeting for Xklp2 family protein 124 2e-28
Os03g0799100 Similar to WAVE-DAMPENED2 105 9e-23
>Os11g0571900 Targeting for Xklp2 family protein
Length = 430
Score = 596 bits (1536), Expect = e-170, Method: Compositional matrix adjust.
Identities = 309/348 (88%), Positives = 309/348 (88%)
Query: 83 LSQSASFPARGXXXXXXXXXXXXXXXDGKGAVPNGSEKAAGRAVEKKVNSARTPAASRSL 142
LSQSASFPARG DGKGAVPNGSEKAAGRAVEKKVNSARTPAASRSL
Sbjct: 83 LSQSASFPARGAAAKKAATPKQAKTTDGKGAVPNGSEKAAGRAVEKKVNSARTPAASRSL 142
Query: 143 PVKSGSVDAPPNDASPETQESNENTTNALEQTLPEKMEDDVHSTTSSTNTPRXXXXXXXX 202
PVKSGSVDAPPNDASPETQESNENTTNALEQTLPEKMEDDVHSTTSSTNTPR
Sbjct: 143 PVKSGSVDAPPNDASPETQESNENTTNALEQTLPEKMEDDVHSTTSSTNTPRAAAQRKNA 202
Query: 203 XXXXGFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFK 262
GFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFK
Sbjct: 203 AAAAGFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFK 262
Query: 263 ATPMPSFYKEQPPKVELKKIPPTRARSPKLGRHKPTNXXXXXXXXXXXXCESPRSITNLA 322
ATPMPSFYKEQPPKVELKKIPPTRARSPKLGRHKPTN CESPRSITNLA
Sbjct: 263 ATPMPSFYKEQPPKVELKKIPPTRARSPKLGRHKPTNSAAAASVDGSVSCESPRSITNLA 322
Query: 323 KLTESTENNKPHATARKPAQRSVTKIPSQASATAKTETKPLVTKQKTSNTKPKAPRAKVE 382
KLTESTENNKPHATARKPAQRSVTKIPSQASATAKTETKPLVTKQKTSNTKPKAPRAKVE
Sbjct: 323 KLTESTENNKPHATARKPAQRSVTKIPSQASATAKTETKPLVTKQKTSNTKPKAPRAKVE 382
Query: 383 QLQDNSVEIPPAEPSGPEGLTVEHGVEDATGPDRATTLVASNEVPVQG 430
QLQDNSVEIPPAEPSGPEGLTVEHGVEDATGPDRATTLVASNEVPVQG
Sbjct: 383 QLQDNSVEIPPAEPSGPEGLTVEHGVEDATGPDRATTLVASNEVPVQG 430
>Os02g0200800 Targeting for Xklp2 family protein
Length = 334
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 104/151 (68%), Gaps = 9/151 (5%)
Query: 207 GFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFKATPM 266
GFSF+ ERAEKRKEFY KLEEKIHA+E+E +NLQAKSKE++EAE+K+LRKSL FKATPM
Sbjct: 127 GFSFKCDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLRKSLNFKATPM 186
Query: 267 PSFYKE-QPPKVELKKIPPTRARSPKLGRHKPTNXXXXXXXXXXXXCESPRSITNLAKLT 325
PSFY+E PPKVELKKIPPTRARSPKLGR K N P ++ L L
Sbjct: 187 PSFYQEPTPPKVELKKIPPTRARSPKLGRSK--NKSAGETEETVTPPGRPVRLS-LDSLD 243
Query: 326 ESTENN-----KPHATARKPAQRSVTKIPSQ 351
E N P +KP ++S+ K+PS+
Sbjct: 244 EKVSQNGVKKANPSNAVKKPQRKSLPKLPSE 274
>Os06g0606800 Targeting for Xklp2 family protein
Length = 372
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 108/155 (69%), Gaps = 4/155 (2%)
Query: 207 GFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFKATPM 266
GF+F+ ERAEKR+EFY KLEEKIHA+ELE++N+QAKSKE++EAE+K LRKSL F+A PM
Sbjct: 195 GFAFKCDERAEKRREFYSKLEEKIHAQELEKSNMQAKSKETEEAELKKLRKSLNFRANPM 254
Query: 267 PSFYKE-QPPKVELKKIPPTRARSPKLGRHKPTNXXXXXXXXXXXXCESPRSITNLAKLT 325
PSFYKE PPKVELKKIP TRARSPKLGR K N P ++ + +
Sbjct: 255 PSFYKEPPPPKVELKKIPTTRARSPKLGRSK--NTSSVSTEESTVPSSRPARLSLDERAS 312
Query: 326 ESTENNKPHA-TARKPAQRSVTKIPSQASATAKTE 359
++ P A T RKP ++S+ K+PS+ + T + E
Sbjct: 313 QNGVKKVPAANTVRKPQRKSLPKLPSEQTVTEQVE 347
>Os11g0592600 Targeting for Xklp2 family protein
Length = 407
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 90/145 (62%), Gaps = 11/145 (7%)
Query: 207 GFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFKATPM 266
G FR ERAEKR+EFY KLEEK A E E+ L+AK K+ QE +KLLRKSLTFKATPM
Sbjct: 240 GPVFRCTERAEKRREFYMKLEEKHQALEEEKIQLEAKLKKEQEEALKLLRKSLTFKATPM 299
Query: 267 PSFYKEQP-PKVELKKIPPTRARSPKLGRHK------PTNXXXXXXXXXXXXCESPR-SI 318
PSFY E P PK E KK+P TR +SPKLGR K +N C + R S+
Sbjct: 300 PSFYHEAPSPKAEYKKLPTTRPKSPKLGRRKASTAADASNSSEESDSTPRPCCRASRDSL 359
Query: 319 TNLAKLTESTENNKPH--ATARKPA 341
++ K + S+ N KP ATA KPA
Sbjct: 360 DSICKCSSSSRNGKPQQPATA-KPA 383
>Os03g0799100 Similar to WAVE-DAMPENED2
Length = 359
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 209 SFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRKSLTFKATPMPS 268
SF +RA+KRKEFY KLEEK A E E+ +A+ KE QE +K LRKSL +A PMPS
Sbjct: 217 SFVCADRADKRKEFYTKLEEKHKALEAEKNEAEARKKEEQETALKQLRKSLVIRAKPMPS 276
Query: 269 FYKEQ-PPKVELKKIPPTRARSPKLGRHK 296
FY+E PPK ELKK+PPTRA+SPK R +
Sbjct: 277 FYQEGPPPKAELKKVPPTRAKSPKFTRRR 305
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.302 0.120 0.322
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,063,697
Number of extensions: 428441
Number of successful extensions: 1610
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1602
Number of HSP's successfully gapped: 6
Length of query: 430
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 326
Effective length of database: 11,605,545
Effective search space: 3783407670
Effective search space used: 3783407670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 157 (65.1 bits)