BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0495700 Os11g0495700|Os11g0495700
(327 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0495700 556 e-159
Os03g0411300 EF-Hand type domain containing protein 179 2e-45
Os09g0482840 Calcium-binding EF-hand domain containing protein 80 2e-15
Os09g0483300 Calcium-binding EF-hand domain containing protein 80 2e-15
Os09g0483500 Calcium-binding EF-hand domain containing protein 79 6e-15
Os09g0483100 EF-Hand type domain containing protein 75 7e-14
Os09g0482800 Calcium-binding EF-hand domain containing protein 73 2e-13
AK121706 73 2e-13
Os07g0173600 72 6e-13
>Os11g0495700
Length = 327
Score = 556 bits (1433), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/327 (85%), Positives = 278/327 (85%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF
Sbjct: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
Query: 61 GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCAAXXXXXXXXXXX 120
GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCAA
Sbjct: 61 GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCAAPSEPRGPRGSR 120
Query: 121 XXXXXXXDAGDGGRLRLSMLGTSTAVPSMMVVAGWTSSGYGAAAERRQHQQYPGTSNNPP 180
DAGDGGRLRLSMLGTSTAVPSMMVVAGWTSSGYGAAAERRQHQQYPGTSNNPP
Sbjct: 121 GREKSSPDAGDGGRLRLSMLGTSTAVPSMMVVAGWTSSGYGAAAERRQHQQYPGTSNNPP 180
Query: 181 LDRPNSTTIPQITXXXXXXXXXXXAMLQMMDSMAKVEERRSKQAERRSEDAVIGTVLSRP 240
LDRPNSTTIPQIT AMLQMMDSMAKVEERRSKQAERRSEDAVIGTVLSRP
Sbjct: 181 LDRPNSTTIPQITKELKEEVLELKAMLQMMDSMAKVEERRSKQAERRSEDAVIGTVLSRP 240
Query: 241 AVAQSTPHRTPSSLRPGQSTVFKGPYHMRHQAKRSLTSIDPMXXXXXXXXXXXXXXXXXX 300
AVAQSTPHRTPSSLRPGQSTVFKGPYHMRHQAKRSLTSIDPM
Sbjct: 241 AVAQSTPHRTPSSLRPGQSTVFKGPYHMRHQAKRSLTSIDPMAASTTSLQSAAATTQRTQ 300
Query: 301 XXLHLVLGHGNGSATTMLDGVGGGNAD 327
LHLVLGHGNGSATTMLDGVGGGNAD
Sbjct: 301 ASLHLVLGHGNGSATTMLDGVGGGNAD 327
>Os03g0411300 EF-Hand type domain containing protein
Length = 158
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 99/108 (91%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
MSVVILDGSTVRGFVADDDAFARSVDARFEAL+ NGDGVLS A+LRRALESF LL GAGF
Sbjct: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLDGAGF 60
Query: 61 GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCA 108
GSA+ AP+PAEVSALYDS+FEQFDADHS AVDRAEFRD+MR I+ + A
Sbjct: 61 GSAEPAPLPAEVSALYDSVFEQFDADHSGAVDRAEFRDQMRRIMLAVA 108
>Os09g0482840 Calcium-binding EF-hand domain containing protein
Length = 137
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
MSV ILDG TV FV D+ AF SVD RF AL+TN DG+LS A++ L S +L F
Sbjct: 1 MSVEILDGKTVLSFVEDEGAFNSSVDGRFAALDTNRDGLLSYAEMANELMSLRVL-DKHF 59
Query: 61 GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCA 108
G + A E+ LY +F +FD D S AVD EFR M+ +L + A
Sbjct: 60 GVDEAAMGADELVELYHGLFLRFDRDGSGAVDLEEFRAEMKEVLLAVA 107
>Os09g0483300 Calcium-binding EF-hand domain containing protein
Length = 140
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLL---YG 57
MSV ILDG TVR FV D+ AF SVD RF AL+ N DGVLS A++ L S +L +G
Sbjct: 1 MSVEILDGKTVRSFVEDEGAFNSSVDGRFAALDANRDGVLSYAEMAGELMSLRVLEKHFG 60
Query: 58 AGFGSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCA 108
A A + E++ALY +F +FD D S VD EFR M+ +L + A
Sbjct: 61 ADEDEAAMG--ADELAALYRGLFARFDRDGSGGVDLEEFRAEMKEVLLAVA 109
>Os09g0483500 Calcium-binding EF-hand domain containing protein
Length = 137
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
MSV ILDG T+R FV D+ AF SVD RF AL+TN DG+LS +++ + L S +L F
Sbjct: 1 MSVEILDGKTIRSFVEDEGAFNSSVDGRFAALDTNRDGLLSYSEMAKELMSLRVL-EKHF 59
Query: 61 GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCA 108
G + A E+ +Y ++ +FD D + VD EFR M+ ++ + A
Sbjct: 60 GVDEAAMSSDELVEMYRGLYARFDHDGNGTVDLEEFRAEMKEVMLAVA 107
>Os09g0483100 EF-Hand type domain containing protein
Length = 138
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
MSV ILDG TVR FV D+ AF SVD RF AL+ N DG+LS ++ L S +L F
Sbjct: 1 MSVEILDGKTVRSFVEDEGAFNSSVDGRFAALDANRDGLLSYTEMAGELMSLRVLE-KHF 59
Query: 61 GSAQLAPVPA-EVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCA 108
G A + A E+ LY +F +FD D + AVD EFR M+ +L + A
Sbjct: 60 GVDDEAAMGADELVELYRGLFARFDRDGNGAVDLEEFRAEMKEMLLAVA 108
>Os09g0482800 Calcium-binding EF-hand domain containing protein
Length = 137
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
MSV ILDG TV FV D+ AF +VD RF AL+ + DG LS A + L S +L F
Sbjct: 1 MSVEILDGRTVESFVEDEGAFNSTVDDRFAALDGDRDGRLSYADMAGELMSLRVLE-THF 59
Query: 61 GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCAA 109
G A AE+ LY +F +FD D AVDR EFR M+ ++ + A+
Sbjct: 60 GVDGAAATDAELVDLYRGLFARFDRDGDGAVDREEFRAEMKEVMLAVAS 108
>AK121706
Length = 137
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCAKLRRALESFLLLYGAGF 60
MSV ILDG TV FV D+ AF +VD RF AL+ + DG LS A + L S +L F
Sbjct: 1 MSVEILDGRTVESFVEDEGAFNSTVDDRFAALDGDRDGRLSYADMAGELMSLRVLE-THF 59
Query: 61 GSAQLAPVPAEVSALYDSIFEQFDADHSSAVDRAEFRDRMRCILGSCAA 109
G A AE+ LY +F +FD D AVDR EFR M+ ++ + A+
Sbjct: 60 GVDGAAATDAELVDLYRGLFARFDRDGDGAVDREEFRAEMKEVMLAVAS 108
>Os07g0173600
Length = 113
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/45 (84%), Positives = 39/45 (86%), Gaps = 2/45 (4%)
Query: 1 MSVVILD--GSTVRGFVADDDAFARSVDARFEALNTNGDGVLSCA 43
MSVVILD STVRGFVADDDAF RSVDARFEAL+ NGDGVLS A
Sbjct: 1 MSVVILDLDESTVRGFVADDDAFGRSVDARFEALDANGDGVLSLA 45
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,161,234
Number of extensions: 373777
Number of successful extensions: 1257
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1247
Number of HSP's successfully gapped: 10
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)