Os11g0495700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0495700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.74 | 0.543 | 6.29 | 0.065 | 0.994 | 1.47 | 0.286 | 0.51 | 0.0936 | 18.2 | 25 | 718 | -- | -- |
| 133.83 | 0.539 | 6.28 | 0.151 | 1.03 | 1.46 | 0.131 | -- | 0.119 | 18 | 25 | 608 | -- | -- |
| 133.75 | 0.539 | 6.29 | 0.0912 | 1.03 | 1.49 | -- | 0.363 | 0.104 | 18.1 | 25 | 610 | -- | -- |
| 133.85 | 0.539 | 6.28 | 0.139 | 1.03 | 1.42 | -- | -- | 0.113 | 18 | 25 | 600 | -- | -- |
| 174.38 | 0.615 | 6.29 | -0.0323 | -- | 1.28 | -- | 0.81 | 0.0397 | -- | 25.4 | 2693 | -- | -- |
| 164.01 | 0.6 | 6.34 | -0.248 | 0.899 | -- | 0.0665 | -- | -0.185 | 17.5 | -- | -- | -- | -- |
| 164.02 | 0.6 | 6.34 | -0.249 | 0.9 | -- | -- | -- | -0.184 | 17.5 | -- | -- | -- | -- |
| 174.86 | 0.616 | 6.27 | 0.157 | -- | 1.41 | -- | -- | 0.0824 | -- | 25.6 | 1218 | -- | -- |
| 134.33 | 0.54 | 6.28 | -- | 1.02 | 1.38 | -- | -- | 0.0951 | 18 | 25 | 601 | -- | -- |
| 206.15 | 0.671 | 6.33 | -0.279 | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
| 165.65 | 0.602 | 6.34 | -- | 0.904 | -- | -- | -- | -0.157 | 17.4 | -- | -- | -- | -- |
| 175.31 | 0.617 | 6.26 | -- | -- | 1.4 | -- | -- | 0.0861 | -- | 25.7 | 1237 | -- | -- |
| 208.2 | 0.673 | 6.32 | -- | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 2 | 130.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 14 | 132.24 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 15 | 132.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 16 | 132.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 9 |
| 45 | 132.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 64 | 133.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 21 |
| 82 | 133.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 117 | 133.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 140 | 133.74 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 159 | 133.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 167 | 134.03 | temperature | 25 | 270 | < th | dose dependent | sin | 6 | NA |
| 172 | 134.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 185 | 134.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 192 | 134.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 225 | 134.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 293 | 134.91 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 357 | 135.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 760 | 136.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 824 | 136.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 887 | 136.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 950 | 137.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |