BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0294600 Os11g0294600|AK101298
(173 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0294600 Zinc finger, RING-type domain containing protein 325 1e-89
Os10g0142100 Zinc finger, RING-type domain containing protein 214 2e-56
Os03g0598700 Zinc finger, RING-type domain containing protein 88 3e-18
Os11g0629300 Similar to RING-H2 finger protein RHB1a 86 1e-17
Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragm... 81 3e-16
>Os11g0294600 Zinc finger, RING-type domain containing protein
Length = 173
Score = 325 bits (832), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 13 ETDRAPVHIYRQQNQEEHEPLSSAYDGSSPASAIVAVDTNLDTSTPDTYRAPPAPLPYDV 72
ETDRAPVHIYRQQNQEEHEPLSSAYDGSSPASAIVAVDTNLDTSTPDTYRAPPAPLPYDV
Sbjct: 13 ETDRAPVHIYRQQNQEEHEPLSSAYDGSSPASAIVAVDTNLDTSTPDTYRAPPAPLPYDV 72
Query: 73 SLPVPENPDLEKSDLKSKTDDQQEESLEVDEFKSCEKCVAEDKPDEEDVCPICLEEYDAE 132
SLPVPENPDLEKSDLKSKTDDQQEESLEVDEFKSCEKCVAEDKPDEEDVCPICLEEYDAE
Sbjct: 73 SLPVPENPDLEKSDLKSKTDDQQEESLEVDEFKSCEKCVAEDKPDEEDVCPICLEEYDAE 132
Query: 133 NPRSLTKCEHHFHLCCILEWMERSDTCPVCDQITLIDDMYE 173
NPRSLTKCEHHFHLCCILEWMERSDTCPVCDQITLIDDMYE
Sbjct: 133 NPRSLTKCEHHFHLCCILEWMERSDTCPVCDQITLIDDMYE 173
>Os10g0142100 Zinc finger, RING-type domain containing protein
Length = 156
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 124/157 (78%), Gaps = 16/157 (10%)
Query: 17 APVHIYRQQNQEEHEPLSSAYDGSSPASAIVAVDTNLDTSTPDTYRAPPAPLPYDVSLPV 76
APV+IY QQN PAS IVA+D NLDTSTPDTYRAPP PLPYDV L +
Sbjct: 16 APVYIYHQQN---------------PASTIVAIDKNLDTSTPDTYRAPPTPLPYDVGLVL 60
Query: 77 PENPDLEKSDLKSKTDDQQEESLEVDEFKSCEKCVAEDKPDEEDVCPICLEEYDAENPRS 136
+NPDLEK+ +K K + +E SL +D+ +S +KCV+EDKPDEEDVCPICLEEYD ENPRS
Sbjct: 61 KDNPDLEKTGIKRKIHEHKE-SLMMDDNESLQKCVSEDKPDEEDVCPICLEEYDEENPRS 119
Query: 137 LTKCEHHFHLCCILEWMERSDTCPVCDQITLIDDMYE 173
+TKCEHHFHLCCILEWMERS+TCPVCDQIT+I+ MYE
Sbjct: 120 MTKCEHHFHLCCILEWMERSETCPVCDQITMINAMYE 156
>Os03g0598700 Zinc finger, RING-type domain containing protein
Length = 213
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 16 RAPVHIYRQQNQEEHEPLSSAYDGS----SPASAIVAVDTNLDTSTPDTYRAPPAPLPYD 71
R P I+ + H S A + +P +++ + DT+R PP PLP+D
Sbjct: 19 RLPWPIFNAAHNHNHNSGSIARPRADTRVAPDQGRISLTAPSQHDSMDTFRCPPRPLPWD 78
Query: 72 ---VSLPVPENPDLEKSDLKSKT---DDQQEESLEVDEFKSCEKCVAEDKP--------- 116
S +P + D S T ES D + K V +D P
Sbjct: 79 DPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISN-SKAVKDDGPSTAVKDDGS 137
Query: 117 --------------------DEEDVCPICLEEYDAENPRSLTKCEHHFHLCCILEWMERS 156
D ED CPICLEEYD ENP+ +C H+FHLCCI EWMERS
Sbjct: 138 SVKHHSDGLHIGKEQVHDLFDFEDDCPICLEEYDYENPKMTLQCNHNFHLCCIYEWMERS 197
Query: 157 DTCPVCDQITLI 168
CPVC ++ L
Sbjct: 198 QACPVCSKVMLF 209
>Os11g0629300 Similar to RING-H2 finger protein RHB1a
Length = 220
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 84/186 (45%), Gaps = 37/186 (19%)
Query: 22 YRQQNQEEHEPLSSAYDGSSPASAIVAVDTNLDTSTPDTYRAPPAPLPYD---------- 71
+ QQ + L A + + +I A + S+ DTYR+PP PLPYD
Sbjct: 33 FTQQLINAYTVLFRAGTVHAVSQSIEATPVDSSESSFDTYRSPPRPLPYDDPRFSPPQRD 92
Query: 72 --VSLPVPENPDLEKSDLKSKTDDQQEESLEVD----------EFKSCEKCVAEDKP--- 116
VS P E+S+ DD++ E+ + K E P
Sbjct: 93 WLVSRHGPSCHSPEESEPLRANDDEEMETPSSTHKSSKTNYDTKMKRSSSTHGEKLPTKE 152
Query: 117 ------------DEEDVCPICLEEYDAENPRSLTKCEHHFHLCCILEWMERSDTCPVCDQ 164
++EDVCP CLE+Y +ENPR + +C HHFHL CI EWMERS+ CPVC +
Sbjct: 153 PGNYFTYFSPSAEDEDVCPTCLEDYTSENPRIVMQCSHHFHLGCIYEWMERSEACPVCGK 212
Query: 165 ITLIDD 170
D+
Sbjct: 213 KMEFDE 218
>Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragment)
Length = 229
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 94 QQEESLEVDEFKSCEKCVAEDKPDEEDVCPICLEEYDAENPRSLTKCEHHFHLCCILEWM 153
+ ES + KS A ++EDVCP CLEEY +NP+ + KC HH+HL CI EWM
Sbjct: 151 HRSESTKSLSAKSYNSSFAVVTSEDEDVCPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWM 210
Query: 154 ERSDTCPVCDQ 164
ERSDTCP+C +
Sbjct: 211 ERSDTCPICGK 221
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,649,997
Number of extensions: 313230
Number of successful extensions: 1796
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1817
Number of HSP's successfully gapped: 6
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 152 (63.2 bits)