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Os10g0142100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0177) R2 : 0.893
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.12 (0.0512) R2dE : 0.884 R2E : 0.889
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.135 (0.0373) R2dN8 : 0.00383 R2N8 : 0.00896
σ : 0.332
deviance : 50.82
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C
peak time of C : --
E
wheather : temperature
threshold : 7.575
memory length : 324
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.23
open length of G : 7.37

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.56 0.292 11.4 -0.318 0.603 -2.73 -0.85 1.02 -0.166 18.5 9.865 281 4.12 7.01
39.82 0.294 11.4 -0.347 0.6 -2.69 -1.25 -- -0.176 18.9 9.642 288 4.1 6.97
39.92 0.294 11.4 -0.297 0.613 -2.71 -- 1.46 -0.165 18.8 9.939 283 4.13 6.98
44 0.309 11.4 -0.342 0.626 -2.68 -- -- -0.18 18.9 9.269 290 4.13 6.88
44.55 0.311 11.4 -0.215 -- -3.04 -- 2.09 -0.132 -- 8.542 306 3.3 7.55
114.88 0.502 11.5 -0.497 2.42 -- -0.649 -- -0.308 21.6 -- -- -- --
116.43 0.505 11.5 -0.473 2.42 -- -- -- -0.307 21.6 -- -- -- --
47.98 0.323 11.4 -0.348 -- -3.05 -- -- -0.183 -- 6.192 308 3.36 7.37
46.92 0.319 11.4 -- 0.631 -2.73 -- -- -0.139 18.8 10.44 291 4.15 6.82
461.85 1 11.4 -0.455 -- -- -- -- -0.313 -- -- -- -- --
122.34 0.517 11.5 -- 2.42 -- -- -- -0.255 21.6 -- -- -- --
50.82 0.332 11.4 -- -- -3.12 -- -- -0.135 -- 7.575 324 3.23 7.37
467.31 1.01 11.4 -- -- -- -- -- -0.262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.81 temperature 10.0 270 > th dose dependent rect. 4 7
9 49.22 temperature 20.0 270 > th dose independent rect. 5 6
33 55.91 temperature 15.0 10 > th dose dependent rect. 6 7
45 58.17 radiation 1.0 270 < th dose dependent rect. 22 13
49 58.41 temperature 10.0 270 > th dose dependent rect. 22 7
57 58.96 radiation 1.0 270 < th dose independent rect. 22 13
75 60.23 radiation 1.0 270 < th dose dependent sin 8 NA
88 61.04 radiation 1.0 270 < th dose independent rect. 22 8
97 61.35 wind 7.0 270 < th dose independent rect. 5 6
124 62.45 temperature 15.0 270 > th dose independent rect. 5 17
125 62.46 wind 7.0 270 < th dose independent rect. 22 7
126 62.48 humidity 50.0 270 > th dose independent rect. 5 6
127 62.48 precipitation 0.1 270 < th dose independent rect. 4 7
128 62.48 precipitation 0.1 270 < th dose dependent rect. 4 7
134 62.69 radiation 1.0 270 < th dose independent sin 8 NA
137 62.73 temperature 10.0 270 > th dose independent rect. 22 7
138 62.73 temperature 30.0 270 < th dose independent rect. 22 7
139 62.73 humidity 50.0 270 > th dose independent rect. 22 7
142 62.73 atmosphere 995.0 270 > th dose independent rect. 22 7
143 62.73 radiation 20.0 270 < th dose independent rect. 22 7
147 62.73 radiation 40.0 270 < th dose dependent rect. 22 7
149 62.74 radiation 20.0 270 < th dose dependent rect. 22 7
157 62.87 radiation 1.0 270 > th dose independent sin 8 NA
160 62.91 atmosphere 995.0 270 > th dose independent rect. 5 6
161 62.91 atmosphere 1015.0 270 < th dose independent rect. 5 6
162 62.91 temperature 10.0 270 > th dose independent rect. 11 18
164 62.96 wind 9.0 270 < th dose independent rect. 5 17
166 63.01 precipitation 0.1 270 < th dose independent rect. 11 18
167 63.01 precipitation 0.1 270 < th dose dependent rect. 11 18
175 63.30 precipitation 0.1 270 < th dose independent rect. 22 7
176 63.30 precipitation 0.1 270 < th dose dependent rect. 22 7
181 63.42 wind 9.0 270 < th dose independent rect. 11 18
218 63.96 atmosphere 1015.0 270 < th dose independent rect. 22 7
224 64.05 atmosphere 1015.0 270 < th dose independent rect. 24 16
226 64.06 temperature 10.0 270 > th dose independent rect. 16 8
227 64.06 radiation 40.0 270 < th dose independent rect. 16 8
228 64.06 temperature 10.0 270 > th dose independent rect. 24 16
236 64.25 wind 9.0 270 < th dose dependent rect. 5 6
239 64.27 precipitation 0.1 270 < th dose independent rect. 5 17
240 64.27 precipitation 0.1 270 < th dose dependent rect. 5 17
247 64.49 wind 9.0 270 < th dose dependent rect. 22 7
248 64.53 radiation 1.0 270 > th dose independent rect. 4 7
258 64.56 humidity 60.0 270 > th dose independent rect. 18 16
262 64.71 wind 9.0 270 < th dose independent rect. 16 8
279 64.97 atmosphere 995.0 270 > th dose independent rect. 18 16
280 65.00 precipitation 0.1 270 < th dose independent rect. 10 8
282 65.00 precipitation 0.1 270 < th dose dependent rect. 10 8
284 65.06 atmosphere 995.0 270 > th dose independent rect. 24 16
286 65.07 wind 9.0 270 < th dose independent rect. 18 16
287 65.12 temperature 10.0 270 > th dose independent rect. 10 8
288 65.12 atmosphere 1015.0 270 < th dose independent rect. 10 8
289 65.12 temperature 10.0 270 > th dose independent rect. 18 16
298 65.40 precipitation 0.1 270 < th dose independent rect. 24 16
299 65.40 precipitation 0.1 270 < th dose dependent rect. 24 16
300 65.43 atmosphere 995.0 270 > th dose independent rect. 16 8
308 65.66 radiation 40.0 270 < th dose dependent rect. 16 8
312 65.69 wind 9.0 270 < th dose independent rect. 24 16
336 66.23 precipitation 0.1 270 < th dose independent rect. 18 16
337 66.23 precipitation 0.1 270 < th dose dependent rect. 18 16
339 66.29 wind 9.0 270 < th dose independent rect. 10 8
343 66.34 atmosphere 995.0 270 > th dose independent rect. 5 17
360 66.63 precipitation 0.1 270 < th dose independent rect. 16 8
361 66.63 precipitation 0.1 270 < th dose dependent rect. 16 8
363 66.67 humidity 50.0 270 > th dose independent rect. 16 8
380 66.97 atmosphere 1015.0 270 < th dose independent rect. 5 17
407 67.13 wind 1.0 270 > th dose independent rect. 16 8
420 67.40 radiation 40.0 270 < th dose independent rect. 18 15
421 67.40 humidity 50.0 270 > th dose dependent rect. 22 7
448 67.97 wind 1.0 270 > th dose independent rect. 10 8
468 68.34 atmosphere 995.0 270 > th dose independent rect. 11 18
486 68.54 humidity 50.0 270 > th dose independent rect. 5 17
497 68.82 atmosphere 1015.0 270 < th dose independent rect. 11 18
513 69.02 atmosphere 995.0 270 > th dose dependent rect. 23 6
514 69.03 temperature 30.0 270 < th dose independent rect. 18 15
550 69.32 temperature 20.0 10 > th dose independent rect. 6 7
593 69.70 atmosphere 995.0 270 > th dose independent rect. 10 8
602 69.84 wind 1.0 270 > th dose independent rect. 23 6
608 69.95 radiation 1.0 270 > th dose independent rect. 10 8
679 70.56 humidity 50.0 270 > th dose independent rect. 24 16
703 70.72 radiation 30.0 10 < th dose dependent rect. 24 8
792 71.25 wind 1.0 270 > th dose independent rect. 5 6
846 71.56 temperature 10.0 90 > th dose dependent rect. 13 16
862 71.64 wind 1.0 270 > th dose independent rect. 5 17