BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0142100 Os10g0142100|AK071673
(156 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0142100 Zinc finger, RING-type domain containing protein 323 2e-89
Os11g0294600 Zinc finger, RING-type domain containing protein 228 9e-61
Os11g0629300 Similar to RING-H2 finger protein RHB1a 89 1e-18
Os03g0598700 Zinc finger, RING-type domain containing protein 87 6e-18
Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragm... 79 2e-15
>Os10g0142100 Zinc finger, RING-type domain containing protein
Length = 156
Score = 323 bits (829), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MGGCCCSSTRSASVGAPVYIYHQQNPASTIVAIDKNLDTSTPDTYRAPPTPLPYDVGLVL 60
MGGCCCSSTRSASVGAPVYIYHQQNPASTIVAIDKNLDTSTPDTYRAPPTPLPYDVGLVL
Sbjct: 1 MGGCCCSSTRSASVGAPVYIYHQQNPASTIVAIDKNLDTSTPDTYRAPPTPLPYDVGLVL 60
Query: 61 KDNPDLEKTGIKRKIHEHKESLMMDDNESLQKCVSEDKPDEEDVCPICLEEYDEENPRSM 120
KDNPDLEKTGIKRKIHEHKESLMMDDNESLQKCVSEDKPDEEDVCPICLEEYDEENPRSM
Sbjct: 61 KDNPDLEKTGIKRKIHEHKESLMMDDNESLQKCVSEDKPDEEDVCPICLEEYDEENPRSM 120
Query: 121 TKCEHHFHLCCILEWMERSETCPVCDQITMINAMYE 156
TKCEHHFHLCCILEWMERSETCPVCDQITMINAMYE
Sbjct: 121 TKCEHHFHLCCILEWMERSETCPVCDQITMINAMYE 156
>Os11g0294600 Zinc finger, RING-type domain containing protein
Length = 173
Score = 228 bits (582), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/173 (66%), Positives = 134/173 (77%), Gaps = 17/173 (9%)
Query: 1 MGGCCCSSTRSASVG-APVYIYHQQN---------------PASTIVAIDKNLDTSTPDT 44
MGGCCC S+R + APV+IY QQN PAS IVA+D NLDTSTPDT
Sbjct: 1 MGGCCCCSSRGSETDRAPVHIYRQQNQEEHEPLSSAYDGSSPASAIVAVDTNLDTSTPDT 60
Query: 45 YRAPPTPLPYDVGLVLKDNPDLEKTGIKRKIHEHKE-SLMMDDNESLQKCVSEDKPDEED 103
YRAPP PLPYDV L + +NPDLEK+ +K K + +E SL +D+ +S +KCV+EDKPDEED
Sbjct: 61 YRAPPAPLPYDVSLPVPENPDLEKSDLKSKTDDQQEESLEVDEFKSCEKCVAEDKPDEED 120
Query: 104 VCPICLEEYDEENPRSMTKCEHHFHLCCILEWMERSETCPVCDQITMINAMYE 156
VCPICLEEYD ENPRS+TKCEHHFHLCCILEWMERS+TCPVCDQIT+I+ MYE
Sbjct: 121 VCPICLEEYDAENPRSLTKCEHHFHLCCILEWMERSDTCPVCDQITLIDDMYE 173
>Os11g0629300 Similar to RING-H2 finger protein RHB1a
Length = 220
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 85/193 (44%), Gaps = 50/193 (25%)
Query: 1 MGGCCCSSTRSASVGAPVYIYHQQNPASTIVAIDKNLDT-------STPDTYRAPPTPLP 53
+GGC C + + + Y A T+ A+ ++++ S+ DTYR+PP PLP
Sbjct: 24 LGGCMCLRCFTQQL---INAYTVLFRAGTVHAVSQSIEATPVDSSESSFDTYRSPPRPLP 80
Query: 54 YD--------------------------VGLVLKDNPDLEK-------------TGIKRK 74
YD L D+ ++E T +KR
Sbjct: 81 YDDPRFSPPQRDWLVSRHGPSCHSPEESEPLRANDDEEMETPSSTHKSSKTNYDTKMKRS 140
Query: 75 IHEHKESLMMDDNESLQKCVSEDKPDEEDVCPICLEEYDEENPRSMTKCEHHFHLCCILE 134
H E L + + S DE DVCP CLE+Y ENPR + +C HHFHL CI E
Sbjct: 141 SSTHGEKLPTKEPGNYFTYFSPSAEDE-DVCPTCLEDYTSENPRIVMQCSHHFHLGCIYE 199
Query: 135 WMERSETCPVCDQ 147
WMERSE CPVC +
Sbjct: 200 WMERSEACPVCGK 212
>Os03g0598700 Zinc finger, RING-type domain containing protein
Length = 213
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 71/145 (48%), Gaps = 35/145 (24%)
Query: 43 DTYRAPPTPLPYD-------------VGLVLKDNPDLEKTGI------------KRKIHE 77
DT+R PP PLP+D VG K + K+G + + +
Sbjct: 66 DTFRCPPRPLPWDDPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISNSKAVKD 125
Query: 78 HKESLMMDDNESLQKCVSE----------DKPDEEDVCPICLEEYDEENPRSMTKCEHHF 127
S + D+ S K S+ D D ED CPICLEEYD ENP+ +C H+F
Sbjct: 126 DGPSTAVKDDGSSVKHHSDGLHIGKEQVHDLFDFEDDCPICLEEYDYENPKMTLQCNHNF 185
Query: 128 HLCCILEWMERSETCPVCDQITMIN 152
HLCCI EWMERS+ CPVC ++ + +
Sbjct: 186 HLCCIYEWMERSQACPVCSKVMLFH 210
>Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragment)
Length = 229
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 7/77 (9%)
Query: 74 KIH--EHKESLMMDD-NESLQKCVSEDKPDEEDVCPICLEEYDEENPRSMTKCEHHFHLC 130
K+H E +SL N S SED EDVCP CLEEY +NP+ + KC HH+HL
Sbjct: 149 KVHRSESTKSLSAKSYNSSFAVVTSED----EDVCPTCLEEYTPDNPKIIAKCSHHYHLS 204
Query: 131 CILEWMERSETCPVCDQ 147
CI EWMERS+TCP+C +
Sbjct: 205 CIYEWMERSDTCPICGK 221
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,224,729
Number of extensions: 277482
Number of successful extensions: 1270
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1293
Number of HSP's successfully gapped: 7
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)