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Os11g0629300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein RHB1a.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0211) R2 : 0.00902
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0906 (0.0445) R2dN8 : 0.0116 R2N8 : 0.00902
σ : 0.398
deviance : 72.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.54 0.299 7.83 0.637 0.224 1.69 -0.487 2.7 0.076 5.69 0.7483 1412 -- --
43.47 0.307 7.78 0.888 0.186 1.12 -0.551 -- 0.13 4.97 1.407 1383 -- --
40.97 0.298 7.84 0.628 0.215 1.77 -- 2.95 0.0682 5.46 0.5764 1403 -- --
44.3 0.31 7.78 0.872 0.195 1.1 -- -- 0.119 4.91 1.637 1377 -- --
43.34 0.307 7.84 0.649 -- 1.71 -- 2.73 0.0745 -- 0.5977 1398 -- --
58.16 0.358 7.81 0.637 0.26 -- -0.068 -- -0.0235 7.79 -- -- -- --
58.17 0.357 7.81 0.635 0.26 -- -- -- -0.0232 7.94 -- -- -- --
43.6 0.308 7.79 0.845 -- 1.09 -- -- 0.147 -- 2.407 8126 -- --
61.94 0.367 7.82 -- 0.199 0.769 -- -- -0.0094 4.98 2.564 1358 -- --
61.85 0.367 7.82 0.638 -- -- -- -- -0.0198 -- -- -- -- --
68.81 0.388 7.83 -- 0.264 -- -- -- -0.0939 7.77 -- -- -- --
59.07 0.358 7.79 -- -- 0.756 -- -- 0.126 -- 6.489 8089 -- --
72.58 0.398 7.84 -- -- -- -- -- -0.0906 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.51 humidity 70.0 14400 < th dose dependent rect. 18 1
3 39.70 humidity 70.0 14400 < th dose dependent rect. 18 13
4 39.76 humidity 70.0 14400 < th dose dependent rect. 18 4
14 39.93 radiation 1.0 14400 < th dose independent rect. 18 1
18 39.97 radiation 1.0 14400 < th dose independent rect. 18 6
20 39.99 radiation 1.0 14400 < th dose independent rect. 18 8
21 40.00 radiation 1.0 14400 < th dose independent rect. 18 10
25 40.14 humidity 70.0 14400 < th dose independent rect. 19 1
38 40.64 humidity 60.0 14400 < th dose dependent rect. 16 4
50 40.65 radiation 20.0 14400 < th dose independent rect. 16 15
51 40.66 humidity 60.0 14400 > th dose independent rect. 18 1
53 40.72 radiation 1.0 14400 > th dose independent rect. 18 1
64 40.77 wind 9.0 43200 < th dose independent rect. 19 2
75 40.82 radiation 10.0 14400 > th dose dependent rect. 17 1
89 40.87 wind 9.0 43200 > th dose independent rect. 19 2
90 40.88 wind 9.0 43200 > th dose dependent rect. 19 4
93 40.92 radiation 30.0 4320 < th dose dependent rect. 18 2
144 41.17 radiation 20.0 14400 < th dose independent rect. 16 3
155 41.22 radiation 20.0 14400 < th dose independent rect. 16 10
163 41.26 precipitation 0.1 43200 > th dose dependent rect. 14 5
172 41.30 humidity 70.0 14400 > th dose independent rect. 19 7
176 41.31 humidity 70.0 14400 > th dose independent rect. 19 9
179 41.32 humidity 70.0 14400 > th dose independent rect. 19 11
209 41.39 radiation 1.0 14400 < th dose dependent rect. 18 8
215 41.40 radiation 1.0 14400 < th dose dependent rect. 18 6
216 41.40 radiation 1.0 14400 < th dose dependent rect. 18 10
217 41.41 temperature 30.0 14400 < th dose independent rect. 15 1
233 41.42 precipitation 0.1 43200 > th dose independent rect. 17 2
242 41.44 precipitation 0.1 43200 < th dose independent rect. 17 2
243 41.44 humidity 60.0 14400 > th dose independent rect. 17 3
244 41.44 precipitation 0.1 43200 < th dose dependent rect. 17 2
254 41.47 temperature 30.0 14400 > th dose independent rect. 15 1
281 41.54 radiation 1.0 1440 < th dose dependent sin 13 NA
296 41.57 radiation 10.0 14400 < th dose independent sin 14 NA
301 41.57 radiation 1.0 1440 < th dose dependent rect. 16 14
313 41.61 wind 7.0 43200 > th dose dependent rect. 19 2
315 41.62 precipitation 0.1 43200 > th dose independent rect. 14 4
317 41.62 precipitation 0.1 43200 > th dose dependent rect. 11 7
333 41.67 precipitation 0.1 43200 < th dose independent rect. 14 4
335 41.67 precipitation 0.1 43200 < th dose dependent rect. 14 4
337 41.67 radiation 10.0 14400 > th dose dependent rect. 16 15
350 41.71 radiation 10.0 14400 < th dose independent rect. 14 5
513 41.90 radiation 1.0 1440 < th dose dependent rect. 7 23
515 41.92 radiation 20.0 14400 > th dose dependent rect. 15 17
536 41.95 radiation 1.0 1440 < th dose dependent rect. 15 20
545 41.98 radiation 30.0 14400 < th dose independent rect. 6 3
576 42.02 radiation 30.0 14400 < th dose independent rect. 18 15
582 42.03 radiation 30.0 14400 < th dose independent sin 12 NA
593 42.05 humidity 90.0 43200 < th dose independent rect. 20 1
643 42.15 wind 3.0 43200 < th dose dependent rect. 2 2
644 42.15 wind 9.0 43200 > th dose dependent rect. 19 6
654 42.17 temperature 25.0 14400 > th dose dependent rect. 17 1
660 42.18 wind 9.0 43200 > th dose independent rect. 19 6
665 42.19 precipitation 0.1 43200 > th dose dependent rect. 14 8
678 42.21 precipitation 0.1 43200 > th dose independent rect. 19 1
695 42.22 radiation 1.0 720 < th dose dependent rect. 5 20
704 42.24 precipitation 0.1 43200 < th dose independent rect. 19 1
705 42.24 precipitation 0.1 43200 < th dose dependent rect. 19 1
715 42.26 wind 9.0 43200 > th dose dependent rect. 19 9
716 42.27 temperature 30.0 14400 < th dose independent sin 13 NA
740 42.29 temperature 30.0 14400 > th dose independent sin 13 NA
767 42.31 radiation 1.0 1440 < th dose dependent rect. 5 14
774 42.32 radiation 1.0 1440 < th dose dependent rect. 3 16
777 42.32 radiation 1.0 1440 < th dose dependent rect. 23 20
781 42.33 humidity 90.0 43200 > th dose dependent rect. 21 1
795 42.33 radiation 1.0 1440 < th dose dependent rect. 1 18
804 42.34 wind 9.0 43200 < th dose independent rect. 19 6
817 42.34 radiation 1.0 1440 < th dose dependent rect. 3 23
818 42.34 radiation 1.0 1440 < th dose dependent rect. 5 23
842 42.36 precipitation 0.1 43200 > th dose independent rect. 11 7
860 42.37 wind 5.0 43200 < th dose independent rect. 11 1
861 42.37 humidity 90.0 43200 > th dose independent rect. 21 1
881 42.37 radiation 1.0 1440 < th dose dependent no NA NA
906 42.39 humidity 60.0 43200 > th dose independent rect. 15 1
913 42.40 wind 5.0 43200 > th dose independent rect. 11 1
933 42.40 radiation 1.0 1440 < th dose dependent rect. 10 23
948 42.43 precipitation 0.1 43200 < th dose independent rect. 11 7
949 42.43 radiation 1.0 14400 < th dose independent rect. 7 12
953 42.43 radiation 1.0 14400 < th dose independent rect. 7 17
956 42.43 precipitation 0.1 43200 < th dose dependent rect. 11 7
996 42.45 precipitation 0.1 43200 > th dose dependent rect. 11 11