Os11g0294600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os11g0294600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.75 | 0.261 | 11 | -0.629 | 0.417 | 0.505 | -0.617 | 0.192 | -0.068 | 9.62 | 21.5 | 1081 | -- | -- |
| 30.81 | 0.259 | 11 | -0.674 | 0.409 | 0.497 | -0.678 | -- | -0.0776 | 9.66 | 21.49 | 1133 | -- | -- |
| 32.01 | 0.264 | 11 | -0.586 | 0.434 | 0.509 | -- | 0.447 | -0.0537 | 9.56 | 21.5 | 1005 | -- | -- |
| 32.37 | 0.265 | 11 | -0.688 | 0.416 | 0.459 | -- | -- | -0.0812 | 9.63 | 21.9 | 1136 | -- | -- |
| 40.86 | 0.298 | 11 | -0.597 | -- | 0.515 | -- | 0.403 | -0.0386 | -- | 21.4 | 1386 | -- | -- |
| 38.67 | 0.292 | 11 | -0.485 | 0.366 | -- | -0.647 | -- | 0.0618 | 9.27 | -- | -- | -- | -- |
| 40.17 | 0.297 | 11 | -0.509 | 0.368 | -- | -- | -- | 0.061 | 9.23 | -- | -- | -- | -- |
| 40.95 | 0.298 | 11 | -0.715 | -- | 0.472 | -- | -- | -0.0844 | -- | 21.5 | 1396 | -- | -- |
| 43.31 | 0.307 | 11 | -- | 0.411 | 0.287 | -- | -- | 0.0298 | 9.44 | 22.1 | 1063 | -- | -- |
| 48.05 | 0.324 | 11 | -0.51 | -- | -- | -- | -- | 0.0628 | -- | -- | -- | -- | -- |
| 46.99 | 0.321 | 11 | -- | 0.368 | -- | -- | -- | 0.118 | 9.33 | -- | -- | -- | -- |
| 51.85 | 0.336 | 11 | -- | -- | 0.213 | -- | -- | 0.0651 | -- | 22.1 | 1383 | -- | -- |
| 54.91 | 0.346 | 11 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 5 | 29.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 6 | 29.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 25 | 30.08 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 29 | 30.16 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 37 | 30.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 68 | 30.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 69 | 30.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 175 | 30.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 249 | 31.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 327 | 31.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 334 | 31.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 370 | 31.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 380 | 31.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 381 | 31.36 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 414 | 31.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 7 |
| 415 | 31.42 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 10 |
| 420 | 31.43 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 5 |
| 426 | 31.44 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 7 |
| 432 | 31.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 467 | 31.48 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 497 | 31.51 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 532 | 31.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 618 | 31.63 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 628 | 31.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 638 | 31.65 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 685 | 31.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 790 | 31.76 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 802 | 31.77 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 873 | 31.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 875 | 31.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 916 | 31.85 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 935 | 31.86 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |