BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0246200 Os11g0246200|J100056B01
(383 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0246200 Cyclin-like F-box domain containing protein 681 0.0
Os02g0563000 223 1e-58
Os06g0594400 Cyclin-like F-box domain containing protein 171 8e-43
Os02g0208700 Galactose oxidase, central domain containing p... 145 5e-35
Os10g0388200 Cyclin-like F-box domain containing protein 90 3e-18
Os03g0171600 Cyclin-like F-box domain containing protein 77 3e-14
>Os11g0246200 Cyclin-like F-box domain containing protein
Length = 383
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/383 (90%), Positives = 348/383 (90%)
Query: 1 MRSPRSRALERDAGGVAVEHVELIPGMPDDVAVDCLARVPHGAHRAMRRVCRGWRSXXXX 60
MRSPRSRALERDAGGVAVEHVELIPGMPDDVAVDCLARVPHGAHRAMRRVCRGWRS
Sbjct: 1 MRSPRSRALERDAGGVAVEHVELIPGMPDDVAVDCLARVPHGAHRAMRRVCRGWRSAAAT 60
Query: 61 XXXXXXXXXXGANEDLVYLLQFXXXXXXXXXXXXXXXXXXXXXNSPAYGVAVYNVTTGEW 120
GANEDLVYLLQF NSPAYGVAVYNVTTGEW
Sbjct: 61 PAFAMARAEAGANEDLVYLLQFANPAAAAAAAEEAKEDGDAPANSPAYGVAVYNVTTGEW 120
Query: 121 RREKAAPPVPMFAQCAAVGTRLAVLGGWDPETFEPVADVHVLDASTGVWRSAPPMRSARS 180
RREKAAPPVPMFAQCAAVGTRLAVLGGWDPETFEPVADVHVLDASTGVWRSAPPMRSARS
Sbjct: 121 RREKAAPPVPMFAQCAAVGTRLAVLGGWDPETFEPVADVHVLDASTGVWRSAPPMRSARS 180
Query: 181 FFACAEAGGRIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDECDGMATVAGDR 240
FFACAEAGGRIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDECDGMATVAGDR
Sbjct: 181 FFACAEAGGRIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDECDGMATVAGDR 240
Query: 241 FLAVSGYRTARQGGFERDAEWFDPAARAWRRLDRVRAPPSAAHVVVRGRVWCIEGAAVME 300
FLAVSGYRTARQGGFERDAEWFDPAARAWRRLDRVRAPPSAAHVVVRGRVWCIEGAAVME
Sbjct: 241 FLAVSGYRTARQGGFERDAEWFDPAARAWRRLDRVRAPPSAAHVVVRGRVWCIEGAAVME 300
Query: 301 WLGSRGGWREVGPSPPGLKAGTARAVCVGGGERVVVTGAIEDSDGGSGRHALWVFDVKTK 360
WLGSRGGWREVGPSPPGLKAGTARAVCVGGGERVVVTGAIEDSDGGSGRHALWVFDVKTK
Sbjct: 301 WLGSRGGWREVGPSPPGLKAGTARAVCVGGGERVVVTGAIEDSDGGSGRHALWVFDVKTK 360
Query: 361 NWTVVRPPPEFAGFAFSVAAVRI 383
NWTVVRPPPEFAGFAFSVAAVRI
Sbjct: 361 NWTVVRPPPEFAGFAFSVAAVRI 383
>Os02g0563000
Length = 391
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 211/406 (51%), Gaps = 48/406 (11%)
Query: 8 ALERD-----AGGVAVEHVELIPGMPDDVAVDCLARVPHGAHRAMRRVCRGWRSXXXXXX 62
A+ERD A V E ELIPG+PDDVA++CLARVP +HRA+RRVCRGWR
Sbjct: 4 AIERDGALLGAALVEPEAAELIPGLPDDVAMECLARVPSRSHRAVRRVCRGWRRAAASEA 63
Query: 63 XXXXXXXXGANEDLVYLLQFXXXXXXXXXXXXXXXXXXXXXNSPAYGVAVYNVTTGEWRR 122
GA ED+V+L+Q + +A N+TTGEWRR
Sbjct: 64 FRRRRRAAGAAEDVVFLVQ--------ATPARGGDDGKGPSAATECALAAANLTTGEWRR 115
Query: 123 ---------EKAAPPVPMFAQCAAVGT--RLAVLGGWDPETFEPVADVHVLDASTGVWRS 171
E VP FA+CAA G +AV+GGW+P DV VLD GVWR
Sbjct: 116 VEGAGEGEEEAWGGGVPFFARCAAAGDGRHVAVVGGWEPAALCLTRDVRVLDVPAGVWRR 175
Query: 172 APPMRSARSFFACAEAGGRIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDECD 231
M +R FF C +GG +YVAGGHD+ KNAL++A AYD +DAW LPDMSEERDE
Sbjct: 176 GAAMPDSRGFFGCTGSGGVVYVAGGHDESKNALRSAYAYDVASDAWRALPDMSEERDEPQ 235
Query: 232 GMATVAGDRFLAVSGYRTARQGGFERDAEWFDPA----ARAWRRLDRVRAPPSAAHVV-- 285
+A R LA SGY T QG F++ AE + A AW + AP +A +
Sbjct: 236 LVANPG--RVLAASGYPTDAQGAFKKTAERYTTTTTGDATAWSSEGDM-APNTAETCLAA 292
Query: 286 VRGRVWCIEG--AAVMEWLGSRGGWREVGPSPPGLKAGTARAVCVGGGER----VVVTGA 339
V G+VW + V EW G G WR+V PPG+KA +AV G G+ V V G
Sbjct: 293 VGGKVWAVGAGKGGVREWDG--GAWRDVADGPPGMKA-CVKAVGAGDGDGAAMFVFVFGK 349
Query: 340 IEDSDGGSGRHALWVFDVK--TKNWTVVRPPPEFAGFAFSVAAVRI 383
+ED ++A WV + W V PP F GF +S AAVR+
Sbjct: 350 VEDGK----QYAAWVMEDAGGAARWRGVAVPPGFGGFVYSGAAVRV 391
>Os06g0594400 Cyclin-like F-box domain containing protein
Length = 381
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 180/388 (46%), Gaps = 33/388 (8%)
Query: 20 HVELIPGMPDDVAVDCLARVPHGAHRAMRRVCRGWRSXXXXXXXXXXXXXXGANEDLVYL 79
+ ELIPG+P++VA +CL RV A+RR+ R W++ G + L
Sbjct: 3 YNELIPGLPEEVARECLIRVGFDQLPAVRRISRQWKAEVESPAYNRLRKAEGLARPALAL 62
Query: 80 LQFXXXXXXXXXXXXXXXXXXXXXNSPAYGVAVYNVTTGEWRREK----AAPPVPMFAQC 135
+Q + +Y + + + G W A+ +P+F Q
Sbjct: 63 VQARRELAEAGPAADKQSSAGGVPGN-SYRMVLLDPAEGRWTPLPEVGGASGSLPLFCQV 121
Query: 136 AAVG------TRLAVLGGWDPETFEPVADVHVLDASTGVWRSAPPMRSAR-SFFACAEAG 188
AAV RL V+GGWDPET+ P V V D TG WR M R SFFACA G
Sbjct: 122 AAVDGGVEGRKRLVVVGGWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRSFFACAAVG 181
Query: 189 GRIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDECDGMATVAGDRFLAVSGYR 248
G+++VAGGHD+ KNAL++A AYD ADAW LPDM+EERDE G+ +FL V GY
Sbjct: 182 GKVFVAGGHDEEKNALRSALAYDPDADAWAALPDMAEERDEPRGLCV--DGKFLVVGGYP 239
Query: 249 TARQGGFERDAEWFDPAARAWRR-----LDRVRAPPSAAHVVVRG-RVWCIEGAAVMEWL 302
T QG F AEWFDPA W +D P + + G R++ + ++
Sbjct: 240 TPAQGRFVGSAEWFDPATSTWSAVQEGFVDDGACPRTCSAAPEAGDRMYMLRDGHLVARH 299
Query: 303 G----SRGGWREVGPSPPGLKAGTARAVCVGGGERVVVTGAIEDSDGGSGRHALWVFDV- 357
G + WR V P P A TA AV V RVVV G SD G ++
Sbjct: 300 GAISSAPAAWRPVAPVPE--DARTAAAVSVIPDGRVVVIG----SDCHGGDQTVYTLREE 353
Query: 358 --KTKNWTVVRPPPEFAGFAFSVAAVRI 383
K +W PPEF+G + + I
Sbjct: 354 AGKPASWARAPAPPEFSGHVQAACLLEI 381
>Os02g0208700 Galactose oxidase, central domain containing protein
Length = 375
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 150/302 (49%), Gaps = 39/302 (12%)
Query: 105 SPAYGVAVYNVTTGEWRREKAAPPVP------MFAQCAAVGT------RLAVLGGWDPET 152
S +Y + +++ G W A PP+P +F Q AAV RL V+GGWDPET
Sbjct: 28 STSYRLVLHDPVAGGW---AALPPLPGAGGLPLFCQLAAVAACGGERRRLVVVGGWDPET 84
Query: 153 FEPVADVHVLDASTGVWRSAPPMRSAR-SFFACAEAGGRIYVAGGHDKHKNALKTAEAYD 211
+ P VHV D +G WR M R SFFACA G ++VAGGHD+ KNAL++A AYD
Sbjct: 85 WAPTDAVHVYDFLSGSWRRGAAMPGPRRSFFACAAVGRWVFVAGGHDEEKNALRSAVAYD 144
Query: 212 AVADAWDPLPDMSEERDECDGMATVAGDRFLAVSGYRTARQGGFERDAEWFDPAARAW-- 269
A ADAW PLPDM+ ERDE G+ G RF+AV GY T QG F AE FDPAA AW
Sbjct: 145 AEADAWVPLPDMAAERDEARGVCV--GGRFVAVGGYPTEAQGRFAGSAEAFDPAAWAWGP 202
Query: 270 ---RRLDRVRAPPSAAHVVVRGRVWCI----EGAAVMEWLGSRGG--WREVGPSPPGLKA 320
R LD P + + +G + GG WR V P +A
Sbjct: 203 VQERVLDEGTCPRTCCAAPAPAAGATMYMLRDGHLAARDATNNGGAAWRAVASLPEDGRA 262
Query: 321 GTARAVCVGGGERVVVTGAIEDSDGG-SGRHALWVFDVKTKN-----WTVVRPPPEFAGF 374
TA A G RVV GA S GG + L + KN W PPEFAG
Sbjct: 263 VTALAAI--GDGRVVAIGA--GSHGGEQAVYLLTTGEGGDKNGAAQSWARAAAPPEFAGV 318
Query: 375 AF 376
++
Sbjct: 319 SY 320
>Os10g0388200 Cyclin-like F-box domain containing protein
Length = 347
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 113/295 (38%), Gaps = 50/295 (16%)
Query: 23 LIPGMPDDVAVDCLARVPHGAHRAMRRVCRGWRSXXXXXXXXXXXXXXGANEDLVYLLQF 82
LI G+P++VA+ CLARVP +H ++ VC WR+ A EDL+ +L F
Sbjct: 5 LIDGLPNEVALQCLARVPFLSHPVLQMVCHSWRASVRNGELSKVRNQISATEDLLCVLAF 64
Query: 83 XXXXXXXXXXXXXXXXXXXXXNSPAYGVAVYNVTTGEWRREKAAPP----VPMFAQCAAV 138
P +Y+ +W P + F A+V
Sbjct: 65 ----------------------EPENMWQLYDPLRDKWITLPVMPSQIRNIARFG-VASV 101
Query: 139 GTRLAVLGGWDPETFEPVADVHVLDASTGVWRSAP---------PMRSARSFFACAEAGG 189
+L V+GG D + AS VW P PM AR+ FAC G
Sbjct: 102 AGKLYVIGGGSDRVDPLTGDHDRIFASNEVWSYDPLCRLWVQRAPMLVARAMFACCALDG 161
Query: 190 RIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDE-CDGMATVAGDRFLAVSGYR 248
I VAGG + ++ AE Y+ AD W+PLPD+ + C G L + G
Sbjct: 162 NIIVAGGFTNCRKSISKAEIYNPEADTWEPLPDLRQAHSSACSG---------LVIKGKM 212
Query: 249 TARQGGFERDAEWFDPAARAWRRLDRVRAPPSAAHVVVRGRVWCIEGAAVMEWLG 303
G D A A ++ P +VRG ++ + + +M+ G
Sbjct: 213 HVLHKGLPTVQILEDGNAWAVEDYSWLQGP----MAMVRGELYVLSNSCIMKQRG 263
>Os03g0171600 Cyclin-like F-box domain containing protein
Length = 431
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 108/284 (38%), Gaps = 44/284 (15%)
Query: 120 WRREKAAPPVPMF----AQCAAVGTRLAVLGGWDPETFEPVADVHVLDASTGVWRSAPPM 175
W + PP F + AVGT L V F V T W A PM
Sbjct: 168 WIQVPKMPPDECFMCSDKESLAVGTELLV--------FAMAHIVFRYSILTNSWTRADPM 219
Query: 176 RSARSFFACAEAGGRIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDECDGMAT 235
S R F G + YVAGG D L +AE YD+ +W PLP M+ R C G+
Sbjct: 220 ISPRCLFGSTSVGAKAYVAGGTDSSGRILSSAEMYDSETHSWTPLPSMNRARKMCSGV-- 277
Query: 236 VAGDRFLAVSGYRTARQGGFERDAEWFDPAARAWRRLDRVR--------APPSAAHVVVR 287
+F V G A E +D R+WR ++ + APP A VV
Sbjct: 278 FMDGKFYVVGG--VASNNKVLTCGEEYDLKRRSWRVIENMSEGLNGVTGAPPLIA--VVN 333
Query: 288 GRVWCIEGAA--VMEWLGSRGGWREVGPSPPGLKAGTARAVCVGG--------GERVVVT 337
++ + + V ++ W +G P R+V + G G+R++V
Sbjct: 334 NELYAADYSEKDVKKYDKQNNKWITLGKLP-------ERSVSMNGWGLAFRACGDRLIVI 386
Query: 338 GAIEDSDGGSGRHALWVFDVKTKNWTVVRPPPEFAGFAFSVAAV 381
G S GG+ W D + W ++ P F ++ A +
Sbjct: 387 GGPRTSIGGTIELNSWTPDERPPVWNLIARRPS-GNFVYNCAVM 429
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,315,283
Number of extensions: 706496
Number of successful extensions: 2394
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2364
Number of HSP's successfully gapped: 10
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)