BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0169200 Os11g0169200|Os11g0169200
(480 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0169200 Amino acid/polyamine transporter II family pro... 776 0.0
Os03g0244600 Similar to AUX1-like protein 642 0.0
Os10g0147400 Similar to Auxin influx carrier protein 639 0.0
Os05g0447200 Similar to AUX1-like protein 622 e-178
Os01g0856500 Amino acid/polyamine transporter II family pro... 607 e-174
>Os11g0169200 Amino acid/polyamine transporter II family protein
Length = 480
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/480 (81%), Positives = 392/480 (81%)
Query: 1 MASEKVETIVAGNYVXXXXXXXXXXXXXXXXXXXXXXXXXXKLAVSSLFWHGGSVYDAWF 60
MASEKVETIVAGNYV KLAVSSLFWHGGSVYDAWF
Sbjct: 1 MASEKVETIVAGNYVEMEREGAATAGEGVGGAAAASGRRRGKLAVSSLFWHGGSVYDAWF 60
Query: 61 SCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTAYLISVLYVEYRTRRERDKV 120
SCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTAYLISVLYVEYRTRRERDKV
Sbjct: 61 SCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTAYLISVLYVEYRTRRERDKV 120
Query: 121 DFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW 180
DFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW
Sbjct: 121 DFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW 180
Query: 181 TYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVAAVVHGKVDGAAPRAGPSKT 240
TYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVAAVVHGKVDGAAPRAGPSKT
Sbjct: 181 TYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVAAVVHGKVDGAAPRAGPSKT 240
Query: 241 MVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIXXXXXXXXXXXXXPSAAAMYWAF 300
MVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMI PSAAAMYWAF
Sbjct: 241 MVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIYLAATAYVLTLTLPSAAAMYWAF 300
Query: 301 GDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTPLYFVWEKAIGVHXXXXXXX 360
GDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTPLYFVWEKAIGVH
Sbjct: 301 GDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTPLYFVWEKAIGVHGGAGVLR 360
Query: 361 XXXXXXXXXXXIWFLAVIFPFFGPINSTVGSFLVSFTVYIIXXXXXXXXXXXXXXRENAV 420
IWFLAVIFPFFGPINSTVGSFLVSFTVYII RENAV
Sbjct: 361 RAAARLPVVLPIWFLAVIFPFFGPINSTVGSFLVSFTVYIIPAMAHMATFAPAAARENAV 420
Query: 421 EPPPRALGGWPGTFAANCXXXXXXXXXXXXXXXXXSTVNFVRQVDTFGLFTKCYQCPPRH 480
EPPPRALGGWPGTFAANC STVNFVRQVDTFGLFTKCYQCPPRH
Sbjct: 421 EPPPRALGGWPGTFAANCFVVAWVLVVGFGFGGWASTVNFVRQVDTFGLFTKCYQCPPRH 480
>Os03g0244600 Similar to AUX1-like protein
Length = 524
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/435 (72%), Positives = 342/435 (78%), Gaps = 2/435 (0%)
Query: 42 KLAVSSLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTA 101
K +S L WHGGS YDAWFSCASNQVAQVLLTLPYSFSQLGM SG+ FQ+FYGL+GSWTA
Sbjct: 38 KSRLSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTA 97
Query: 102 YLISVLYVEYRTRRERDKVDFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQL 161
YLIS+LYVEYRTR+ER+KVDFRNHVIQWFEVLDGLLGRHWRN GL FNCTFLLFGSVIQL
Sbjct: 98 YLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQL 157
Query: 162 IACASNIYYINDRLDKRTWTYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVA 221
IACASNIYYIND+LDKRTWTYIFGACCATTVF+PSFHNYR+WSFLGL+MT+YTAWYL VA
Sbjct: 158 IACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVA 217
Query: 222 AVVHGKVDGAAPRAGPSKTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIXXXX 281
+++HG+VDG +GP+K MVLYFTGATNILYTFGGHAVTVEIMHAMWRP++FK I
Sbjct: 218 SLIHGQVDGVK-HSGPTK-MVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMA 275
Query: 282 XXXXXXXXXPSAAAMYWAFGDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTP 341
PSAA++YWAFGD LL HSNA ALLPRT +RDAAVVLMLIHQFITFGFACTP
Sbjct: 276 TLYVLTLTLPSAASVYWAFGDELLTHSNALALLPRTAFRDAAVVLMLIHQFITFGFACTP 335
Query: 342 LYFVWEKAIGVHXXXXXXXXXXXXXXXXXXIWFLAVIFPFFGPINSTVGSFLVSFTVYII 401
LYFVWEK IG+H IWFLA+IFPFFGPINS VGS LVSFTVYII
Sbjct: 336 LYFVWEKLIGLHDCRSLFKRAAARLPVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYII 395
Query: 402 XXXXXXXXXXXXXXRENAVEPPPRALGGWPGTFAANCXXXXXXXXXXXXXXXXXSTVNFV 461
RENAVEPPPR +G W GTF N S NFV
Sbjct: 396 PALAHMITFRSAHARENAVEPPPRFVGRWTGTFIINAFVVAWVLVVGFGFGGWASMTNFV 455
Query: 462 RQVDTFGLFTKCYQC 476
RQ+DTFGLFTKCYQC
Sbjct: 456 RQIDTFGLFTKCYQC 470
>Os10g0147400 Similar to Auxin influx carrier protein
Length = 547
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/435 (71%), Positives = 340/435 (78%), Gaps = 2/435 (0%)
Query: 45 VSSLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTAYLI 104
+S L WHGGS YDAWFSCASNQVAQVLLTLPYSF+QLGMASG+ FQ+FYGL+GSWTAYLI
Sbjct: 53 LSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGMASGLLFQLFYGLLGSWTAYLI 112
Query: 105 SVLYVEYRTRRERDKVDFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQLIAC 164
S+LY+EYRTR+ERDKVDFRNHVIQWFEVLDGLLGRHWRN GL FNCTFLLFGSVIQLI C
Sbjct: 113 SILYLEYRTRKERDKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIGC 172
Query: 165 ASNIYYINDRLDKRTWTYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVAAVV 224
ASNIYYIND LDKRTWTYIFGACCATTVF+PSFHNYR+WSFLGLLMT+YTAWY+ VA+++
Sbjct: 173 ASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYIAVASLI 232
Query: 225 HGKVDGAAPRAGPSKTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIXXXXXXX 284
HG+V+G A +GP+ ++VLYFTGATNILYTFGGHAVTVEIMHAMWRP++FK I
Sbjct: 233 HGQVEGVA-HSGPT-SIVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLLATVY 290
Query: 285 XXXXXXPSAAAMYWAFGDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTPLYF 344
PSA+A YWAFGDALL HSNA ALLPRTPWRDAAVVLMLIHQFITFGFACTPLYF
Sbjct: 291 VLTLTLPSASAAYWAFGDALLTHSNALALLPRTPWRDAAVVLMLIHQFITFGFACTPLYF 350
Query: 345 VWEKAIGVHXXXXXXXXXXXXXXXXXXIWFLAVIFPFFGPINSTVGSFLVSFTVYIIXXX 404
VWEK +G+H IWFLA+IFPFFGPINS VGS LVSFTVYII
Sbjct: 351 VWEKLVGLHGCPSLCKRAAARLPVVLPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPSL 410
Query: 405 XXXXXXXXXXXRENAVEPPPRALGGWPGTFAANCXXXXXXXXXXXXXXXXXSTVNFVRQV 464
R+NAVE PPR GGW G + N S NFV QV
Sbjct: 411 AYMVTFRSPQSRQNAVERPPRFAGGWTGAYVINSFVVAWVLVVGFGFGGWASITNFVHQV 470
Query: 465 DTFGLFTKCYQCPPR 479
DTFGLF KCYQCPP
Sbjct: 471 DTFGLFAKCYQCPPH 485
>Os05g0447200 Similar to AUX1-like protein
Length = 482
Score = 622 bits (1605), Expect = e-178, Method: Compositional matrix adjust.
Identities = 306/438 (69%), Positives = 337/438 (76%), Gaps = 2/438 (0%)
Query: 42 KLAVSSLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTA 101
K +++SL WHGGSV+DAWFSCASNQVAQVLLTLPYSFSQLGM SG+ QVFYGLMGSWTA
Sbjct: 34 KFSMTSLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGLLLQVFYGLMGSWTA 93
Query: 102 YLISVLYVEYRTRRERDKVDFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQL 161
YLISVLYVEYR R+E++ V F+NHVIQWFEVLDGLLG +W+ AGL FNCTFLLFGSVIQL
Sbjct: 94 YLISVLYVEYRARKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQL 153
Query: 162 IACASNIYYINDRLDKRTWTYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVA 221
IACASNIYYINDRLDKRTWTYIFGACC+TTVF+PSFHNYR+WSFLGL MT+YTAWYL +A
Sbjct: 154 IACASNIYYINDRLDKRTWTYIFGACCSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIA 213
Query: 222 AVVHGKVDGAAPRAGPSKTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIXXXX 281
A VHG+VDG +GPSK MVLYFTGATNILYTFGGHAVTVEIMHAMW+P++FK I
Sbjct: 214 AAVHGQVDGVT-HSGPSK-MVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVA 271
Query: 282 XXXXXXXXXPSAAAMYWAFGDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTP 341
PSA+AMYWAFGDALL HSNAF+LLPR+ WRDAAV+LMLIHQFITFGFACTP
Sbjct: 272 TLYVFTLTLPSASAMYWAFGDALLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTP 331
Query: 342 LYFVWEKAIGVHXXXXXXXXXXXXXXXXXXIWFLAVIFPFFGPINSTVGSFLVSFTVYII 401
LYFVWEKAIG+H IWFLA+IFPFFGPINS VG+ LVSFTVYII
Sbjct: 332 LYFVWEKAIGMHGTRSVLTRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYII 391
Query: 402 XXXXXXXXXXXXXXRENAVEPPPRALGGWPGTFAANCXXXXXXXXXXXXXXXXXSTVNFV 461
R NA E PP L W G F N S NF+
Sbjct: 392 PSLSHILTYRSASARLNAAEKPPPFLPSWSGMFVVNVFVVAWVLVVGFGLGGWASVTNFI 451
Query: 462 RQVDTFGLFTKCYQCPPR 479
+Q+DTFGLF KCYQCPPR
Sbjct: 452 KQIDTFGLFAKCYQCPPR 469
>Os01g0856500 Amino acid/polyamine transporter II family protein
Length = 492
Score = 607 bits (1565), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/436 (68%), Positives = 331/436 (75%), Gaps = 2/436 (0%)
Query: 42 KLAVSSLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTA 101
K ++ +L WHGGSV+DAWFSCASNQVAQVLLTLPYSFSQLGM SGV Q+FYG MGSWTA
Sbjct: 43 KFSMKNLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTA 102
Query: 102 YLISVLYVEYRTRRERDKVDFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQL 161
YLISVLYVEYR+R+E++ V F+NHVIQWFEVLDGLLG +W+ AGL FNCTFLLFGSVIQL
Sbjct: 103 YLISVLYVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQL 162
Query: 162 IACASNIYYINDRLDKRTWTYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVA 221
IACASNIYYINDRLDKRTWTYIFGACCATTVF+PSFHNYR+WSFLGL MT+YTAWYL +A
Sbjct: 163 IACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIA 222
Query: 222 AVVHGKVDGAAPRAGPSKTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIXXXX 281
A+++G+ +G GP+K +VLYFTGATNILYTFGGHAVTVEIMHAMW+P +FK I
Sbjct: 223 ALLNGQAEGIT-HTGPTK-LVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLA 280
Query: 282 XXXXXXXXXPSAAAMYWAFGDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTP 341
PSA+AMYWAFGD LL HSNAF+LLP+T WRDAAV+LMLIHQFITFGFACTP
Sbjct: 281 TLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTP 340
Query: 342 LYFVWEKAIGVHXXXXXXXXXXXXXXXXXXIWFLAVIFPFFGPINSTVGSFLVSFTVYII 401
LYFVWEK IG+H IWFLA+IFPFFGPINS VG+ LVSFTVYII
Sbjct: 341 LYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYII 400
Query: 402 XXXXXXXXXXXXXXRENAVEPPPRALGGWPGTFAANCXXXXXXXXXXXXXXXXXSTVNFV 461
R NA E PP L W G F N S VNF+
Sbjct: 401 PALAHILTYRTASARMNAAEKPPFFLPSWTGMFVLNMFIVVWVLVVGFGLGGWASMVNFI 460
Query: 462 RQVDTFGLFTKCYQCP 477
RQ+DTFGLF KCYQCP
Sbjct: 461 RQIDTFGLFAKCYQCP 476
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.140 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,575,264
Number of extensions: 461322
Number of successful extensions: 1140
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1125
Number of HSP's successfully gapped: 5
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 158 (65.5 bits)