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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0147400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin influx carrier protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.58 (0.0742) R2 : 0.614
β1 : 4.73 (0.351) R2dD : 0.333 R2D : 0.0463
β2 : 4.01 (0.189) R2dC : 0.502 R2C : 0.173
β3 : -4.94 (0.348) R2dE : 0.27 R2E : -0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.15 (1.34) R2dD*E : 0.0504 R2D*E : -0.0553
γ1 : -0.179 (0.167) R2dN8 : 0.00187 R2N8 : 0.0152
σ : 1.24
deviance : 709.35
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_____
C
peak time of C : 8.88
E
wheather : temperature
threshold : 13.81
memory length : 1047
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.48
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
710.69 1.25 5.6 4.57 4.26 -5.33 0.048 6.71 -0.22 9.22 11.47 1059 3.3 --
740.52 1.27 5.75 3.48 3.71 -4.56 2.13 -- -0.542 8.66 14.7 1127 3.95 --
709.35 1.24 5.58 4.73 4.01 -4.94 -- 7.15 -0.179 8.88 13.81 1047 3.48 --
745.37 1.27 5.78 3.51 3.06 -4.99 -- -- -0.534 10 13.58 1055 1.23 --
1071.12 1.52 5.65 4.81 -- -4.04 -- 10.8 -0.12 -- 22.31 945 0.00612 --
1031.11 1.51 5.97 2.2 2.84 -- 1.87 -- -1.42 8.05 -- -- -- --
1041.57 1.51 5.97 2.26 2.84 -- -- -- -1.42 8.06 -- -- -- --
1015.75 1.48 5.83 3.8 -- -5.43 -- -- -0.398 -- 13.59 1190 0.00141 --
1028.97 1.49 5.9 -- 3.47 -3.64 -- -- -1.17 9.54 11.36 1005 1.75 --
1483.98 1.8 6.04 2.28 -- -- -- -- -1.38 -- -- -- -- --
1175.6 1.6 6.03 -- 2.86 -- -- -- -1.67 8.01 -- -- -- --
1296.06 1.68 6.12 -- -- -3.08 -- -- -1.54 -- 25.68 875 4.11e-05 --
1621.23 1.88 6.1 -- -- -- -- -- -1.64 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 714.88 temperature 30 720 < th dose dependent rect. 16 20
3 717.30 temperature 15 720 > th dose dependent rect. 20 17
21 722.74 temperature 15 720 > th dose dependent sin 8 NA
66 729.43 temperature 10 720 > th dose dependent rect. 12 23
68 729.80 temperature 30 720 < th dose dependent rect. 24 22
70 729.99 temperature 30 270 < th dose dependent rect. 22 23
107 732.59 temperature 30 1440 < th dose dependent rect. 1 8
110 732.71 temperature 15 1440 > th dose dependent rect. 1 8
122 733.07 temperature 25 1440 < th dose dependent rect. 1 6
131 733.48 temperature 25 1440 < th dose dependent rect. 3 1
135 733.63 temperature 25 1440 < th dose dependent rect. 1 4
144 733.86 temperature 10 720 > th dose dependent rect. 1 23
146 733.88 temperature 25 1440 < th dose dependent rect. 19 12
152 733.97 temperature 25 1440 < th dose dependent sin 10 NA
320 736.24 temperature 30 270 < th dose dependent rect. 7 23
413 737.32 temperature 10 1440 > th dose dependent rect. 3 1
429 737.48 wind 9 43200 > th dose dependent rect. 18 12
722 740.19 temperature 30 1440 < th dose dependent no NA NA
768 740.52 temperature 30 1440 < th dose dependent rect. 8 23
770 740.55 temperature 15 720 > th dose dependent no NA NA
816 740.94 wind 9 43200 > th dose independent rect. 18 7
916 741.77 temperature 30 1440 < th dose dependent rect. 3 23
943 741.98 wind 9 43200 < th dose independent rect. 18 7
960 742.15 wind 9 43200 > th dose independent rect. 18 13