BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0151100 Os11g0151100|Os11g0151100
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0151100 Quinonprotein alcohol dehydrogenase-like domai... 437 e-123
Os01g0968100 Root cap family protein 149 3e-36
Os01g0968300 Root cap family protein 148 8e-36
Os04g0410400 Root cap family protein 140 2e-33
Os05g0552600 Root cap family protein 133 2e-31
Os01g0968200 Root cap family protein 130 1e-30
Os01g0968400 Root cap family protein 123 3e-28
>Os11g0151100 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 401
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/327 (70%), Positives = 229/327 (70%)
Query: 75 CQESRKLYPYCSAKMMECPDTCPTSCFVDCDACKPVCVCNVPGACGDPRFIGGDGNAFYF 134
CQESRKLYPYCSAKMMECPDTCPTSCFVDCDACKPVCVCNVPGACGDPRFIGGDGNAFYF
Sbjct: 75 CQESRKLYPYCSAKMMECPDTCPTSCFVDCDACKPVCVCNVPGACGDPRFIGGDGNAFYF 134
Query: 135 HGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKT 194
HGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKT
Sbjct: 135 HGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKT 194
Query: 195 AAWDDDERRYEQRGKGYISPSLIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDG 254
AAWDDDERRYEQRGKGYISPSLID DG
Sbjct: 195 AAWDDDERRYEQRGKGYISPSLIDLLERGPGGAGGGNVLGGELALGLVGGATAGLAVEDG 254
Query: 255 LAVLVELEFXXXXXXXXXXXXXXXXXHLLPGDALDMDXXXXXXXXXXXXXXXXXXXXXXX 314
LAVLVELEF HLLPGDALDMD
Sbjct: 255 LAVLVELEFGDDDLGWVDPDVDGGPVHLLPGDALDMDHPPAAVDLHHLALAALVAPPHHL 314
Query: 315 XXXXXXXGMERTLYLWRSSVESAADMRTRRTDDGAVKCAFRHLRRELVTRGLRFMXXXXX 374
GMERTLYLWRSSVESAADMRTRRTDDGAVKCAFRHLRRELVTRGLRFM
Sbjct: 315 HLVVLADGMERTLYLWRSSVESAADMRTRRTDDGAVKCAFRHLRRELVTRGLRFMAAAAE 374
Query: 375 XXXXXXXXXXXXDEWVARVEERVYSGF 401
DEWVARVEERVYSGF
Sbjct: 375 EEVVELGFSEEGDEWVARVEERVYSGF 401
>Os01g0968100 Root cap family protein
Length = 324
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 75 CQESRKLYPYCSAKMMECPDTCPTSCFVDCDACKPVCVCNV-PG-ACGDPRFIGGDGNAF 132
C +S C AK C CP C V C CK C+C+ PG +CGDPRF GGDGN F
Sbjct: 51 CTDSNGNKAVCMAK---CDKRCPNQCIVMCPGCKTFCMCDFYPGVSCGDPRFTGGDGNNF 107
Query: 133 YFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGAR 192
YFHG++D DFC+VSD DLHINAHFIGKR MSRDFTWIQA+ + F D HRLY+GA
Sbjct: 108 YFHGKKDHDFCIVSDADLHINAHFIGKRNPT-MSRDFTWIQALGIRFAD---HRLYMGAL 163
Query: 193 KTAAWDDDERRYE 205
KTA W+ D+ R E
Sbjct: 164 KTAKWNSDDDRLE 176
>Os01g0968300 Root cap family protein
Length = 330
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 84/119 (70%), Gaps = 6/119 (5%)
Query: 89 MMECPDTCPTSCFVDCDACKPVCVCNV-PG-ACGDPRFIGGDGNAFYFHGRRDADFCVVS 146
M +C CP C V C +CK C+C+ PG +CGDPRF GGDGN FYFHG++D DFC+VS
Sbjct: 68 MAKCDKRCPNQCIVMCPSCKTFCMCDFYPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVS 127
Query: 147 DRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKTAAWDDDERRYE 205
D DLHINAHFIGKR MSRDFTWIQA+ + F D HRLY+GA KTA W D R E
Sbjct: 128 DADLHINAHFIGKRNPT-MSRDFTWIQALGIRFAD---HRLYMGALKTAKWSSDVDRLE 182
>Os04g0410400 Root cap family protein
Length = 355
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 76 QESRKLYPYCSAKMMECPDTCPTSCFVDCDACKPVCVCNVPGA-CGDPRFIGGDGNAFYF 134
Q + P C+ + CP C C+V C CK VC+C + G C DPRF+GGDGN F F
Sbjct: 59 QNNTASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCLCELTGTECYDPRFVGGDGNKFLF 118
Query: 135 HGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKT 194
HGR+DADFC++SD +LHINAHFIGKR A +RDFTW+QA+ + F G HRLY+G R+T
Sbjct: 119 HGRKDADFCLLSDANLHINAHFIGKRNA-AAARDFTWVQALGIRF---GGHRLYLGVRRT 174
Query: 195 AAWD 198
WD
Sbjct: 175 VRWD 178
>Os05g0552600 Root cap family protein
Length = 425
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 71/92 (77%), Gaps = 4/92 (4%)
Query: 113 CNVPGA-CGDPRFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTW 171
CN+PGA C DPRFIGGDGN FYFHGRRD DFC++SD +LHIN HF+G G+ RD TW
Sbjct: 247 CNLPGAVCQDPRFIGGDGNTFYFHGRRDRDFCLLSDANLHINGHFVGNH-VPGLKRDPTW 305
Query: 172 IQAIAVLFDDGGAHRLYVGARKTAAWDDDERR 203
+QAIAV F G HRLYVGAR+TA WDDD R
Sbjct: 306 VQAIAVQFS--GGHRLYVGARRTAVWDDDSDR 335
>Os01g0968200 Root cap family protein
Length = 208
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 76/113 (67%), Gaps = 13/113 (11%)
Query: 89 MMECPDTCPTSCFVDCDACKPVCVCNVPG-ACGDPRFIGGDGNAFYFHGRRDADFCVVSD 147
M +C CP C CD PG +CGDPRF GGDGN FYFHG++D DFC+VSD
Sbjct: 63 MAKCDKRCPNQCMHLCDF--------YPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVSD 114
Query: 148 RDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKTAAWDDD 200
DLHINAHFIGKR MSRDFTWIQA+ + F D HRLY+GA KTA W+ D
Sbjct: 115 ADLHINAHFIGKRNPT-MSRDFTWIQALGIRFAD---HRLYIGALKTAKWNSD 163
>Os01g0968400 Root cap family protein
Length = 248
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 72/98 (73%), Gaps = 6/98 (6%)
Query: 110 VCVCNV-PG-ACGDPRFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSR 167
+ VC++ PG +CGDPRF G DGN FYFHG+++ DFC+VSD DLHINAHFIG M R
Sbjct: 5 MSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNP-AMKR 63
Query: 168 DFTWIQAIAVLFDDGGAHRLYVGARKTAAWDDDERRYE 205
DFTWIQ++ + F D HRLY+GAR+ A WDDDE +
Sbjct: 64 DFTWIQSLGISFGD---HRLYIGARRAAEWDDDEDHVQ 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,133,708
Number of extensions: 347573
Number of successful extensions: 841
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 7
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)