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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0968400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Root cap family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0261) R2 : 0.00139
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0438 (0.055) R2dN8 : 0.00179 R2N8 : 0.00139
σ : 0.492
deviance : 111.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.09 0.42 3.3 -0.138 0.187 0.552 -0.0236 -14.2 -0.0755 8.49 19.37 30 2.09 1.08
87.77 0.44 3.32 0.0871 0.187 1.68 -0.0331 -- -0.0778 8.45 19.37 30 2.09 1.08
80.09 0.42 3.3 -0.139 0.187 0.553 -- -14.2 -0.0755 8.52 19.42 31 2.08 1.08
87.73 0.436 3.32 0.0863 0.185 1.68 -- -- -0.0724 8.72 14.54 50 2.02 0.642
82.05 0.424 3.3 -0.138 -- 0.559 -- -14.2 -0.0742 -- 19.42 31 2.08 1.08
107.62 0.486 3.29 0.0875 0.234 -- -0.397 -- 0.0471 6.1 -- -- -- --
107.95 0.487 3.29 0.0845 0.234 -- -- -- 0.049 6.61 -- -- -- --
89.72 0.441 3.32 0.0893 -- 1.7 -- -- -0.0747 -- 14.18 51 2 0.883
87.92 0.437 3.32 -- 0.189 1.69 -- -- -0.0849 8.67 -15.04 51 2 0.588
110.79 0.492 3.29 0.0901 -- -- -- -- 0.0538 -- -- -- -- --
108.14 0.486 3.29 -- 0.235 -- -- -- 0.0396 6.59 -- -- -- --
89.91 0.442 3.32 -- -- 1.69 -- -- -0.0846 -- -15.74 51 2.02 0.918
111.01 0.492 3.3 -- -- -- -- -- 0.0438 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.31 temperature 20.0 30 > th dose dependent rect. 2 1
2 80.41 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 80.44 atmosphere 1005.0 30 > th dose independent rect. 2 1
5 80.45 temperature 20.0 30 > th dose independent rect. 2 1
8 80.50 radiation 10.0 43200 < th dose dependent rect. 3 1
11 80.54 radiation 1.0 4320 < th dose dependent rect. 3 1
12 80.56 wind 3.0 30 < th dose independent rect. 2 1
13 80.58 wind 5.0 30 < th dose dependent rect. 2 1
23 80.69 humidity 50.0 30 > th dose dependent rect. 2 1
26 80.70 temperature 10.0 30 > th dose independent rect. 2 1
28 80.70 temperature 30.0 30 < th dose independent rect. 2 1
29 80.70 humidity 50.0 30 > th dose independent rect. 2 1
33 80.70 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 80.70 radiation 1.0 30 < th dose independent rect. 2 1
40 80.70 precipitation 0.1 30 < th dose independent rect. 2 1
41 80.70 temperature 10.0 30 > th dose independent rect. 3 23
43 80.70 radiation 1.0 30 < th dose dependent rect. 2 1
48 80.70 precipitation 0.1 30 < th dose dependent rect. 2 1
56 80.73 wind 9.0 1440 < th dose independent rect. 3 1
57 80.73 temperature 10.0 1440 > th dose independent rect. 3 1
60 80.73 temperature 30.0 1440 < th dose independent rect. 3 1
64 80.73 humidity 50.0 1440 > th dose independent rect. 3 1
73 80.73 atmosphere 995.0 1440 > th dose independent rect. 3 1
74 80.73 radiation 1.0 1440 < th dose independent rect. 3 1
94 80.73 temperature 10.0 1440 > th dose independent rect. 4 23
110 81.18 atmosphere 1015.0 30 < th dose dependent rect. 2 1
112 81.41 temperature 30.0 30 < th dose dependent rect. 2 1
114 81.48 atmosphere 1000.0 30 > th dose independent rect. 3 23
115 81.61 wind 1.0 30 > th dose independent rect. 2 1
170 83.06 precipitation 0.1 30 < th dose independent rect. 3 23
171 83.06 precipitation 0.1 30 < th dose dependent rect. 3 23
177 84.63 wind 9.0 30 < th dose independent rect. 3 23
196 88.51 humidity 50.0 30 > th dose independent rect. 3 23
256 93.45 humidity 90.0 90 < th dose independent rect. 2 1
257 93.51 temperature 30.0 30 < th dose independent rect. 3 23
271 94.58 temperature 25.0 270 > th dose independent rect. 23 4
279 95.15 precipitation 0.1 720 < th dose independent rect. 15 8
280 95.15 precipitation 0.1 720 < th dose dependent rect. 15 8
283 95.23 atmosphere 995.0 720 > th dose independent rect. 23 16
287 95.41 atmosphere 1015.0 30 < th dose independent rect. 3 23
288 95.42 temperature 10.0 720 > th dose independent rect. 15 8
289 95.42 temperature 10.0 720 > th dose independent rect. 23 16
299 95.75 temperature 10.0 720 > th dose independent rect. 3 8
300 95.75 atmosphere 995.0 720 > th dose independent rect. 3 8
301 95.75 temperature 10.0 720 > th dose independent rect. 11 16
303 95.78 humidity 50.0 720 > th dose independent rect. 3 8
310 96.11 wind 9.0 720 < th dose independent rect. 3 8
323 96.61 wind 1.0 10 < th dose independent rect. 13 14
327 96.68 atmosphere 995.0 720 > th dose independent rect. 15 8
329 96.68 precipitation 0.1 720 < th dose independent rect. 11 16
332 96.68 precipitation 0.1 720 < th dose dependent rect. 11 16
335 96.71 wind 1.0 10 < th dose independent rect. 17 10
337 96.72 wind 1.0 10 < th dose independent rect. 21 6
349 96.93 atmosphere 995.0 720 > th dose independent rect. 11 16
417 97.82 wind 1.0 10 < th dose independent rect. 6 21
419 97.85 wind 1.0 10 < th dose independent rect. 8 19
438 98.30 precipitation 0.1 720 < th dose independent rect. 3 8
439 98.30 precipitation 0.1 720 < th dose dependent rect. 3 8
440 98.32 atmosphere 1015.0 720 < th dose independent rect. 3 8
451 98.50 precipitation 0.1 720 < th dose independent rect. 23 16
454 98.50 precipitation 0.1 720 < th dose dependent rect. 23 16
490 98.73 wind 1.0 30 > th dose independent rect. 3 23
497 98.84 radiation 40.0 720 < th dose independent rect. 15 8
503 98.89 temperature 10.0 30 > th dose dependent rect. 3 23
513 99.03 humidity 90.0 10 > th dose independent rect. 24 3
521 99.13 radiation 10.0 30 < th dose independent rect. 3 23
525 99.21 wind 9.0 30 < th dose dependent rect. 3 23
533 99.33 radiation 20.0 30 < th dose dependent rect. 3 23
562 99.46 wind 1.0 10 > th dose independent sin 16 NA
584 99.61 wind 3.0 30 < th dose dependent rect. 22 5
598 99.77 wind 1.0 720 > th dose independent rect. 15 8
616 99.98 humidity 50.0 720 > th dose independent rect. 23 16
619 100.03 wind 9.0 720 < th dose independent rect. 15 8
634 100.16 wind 3.0 30 < th dose dependent rect. 20 7
635 100.16 wind 3.0 30 < th dose dependent rect. 13 14
666 100.44 wind 9.0 720 < th dose independent rect. 23 16
672 100.47 wind 3.0 30 < th dose dependent rect. 16 11
676 100.48 atmosphere 995.0 30 > th dose dependent rect. 3 23
685 100.58 wind 1.0 30 > th dose dependent rect. 2 1
774 101.00 humidity 50.0 30 > th dose dependent rect. 3 23
775 101.01 wind 1.0 10 > th dose independent sin 7 NA
852 101.32 wind 1.0 10 > th dose independent rect. 23 23
853 101.32 wind 3.0 30 < th dose dependent rect. 2 7
905 101.58 radiation 40.0 90 < th dose independent rect. 13 14
964 101.64 wind 1.0 10 > th dose independent rect. 16 15
985 101.70 wind 1.0 10 > th dose independent rect. 9 23
988 101.71 atmosphere 1000.0 10 > th dose independent rect. 16 10
990 101.72 atmosphere 1000.0 10 > th dose independent rect. 14 12