BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0968400 Os01g0968400|011-070-F07
(248 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0968400 Root cap family protein 483 e-137
Os01g0968100 Root cap family protein 306 8e-84
Os01g0968300 Root cap family protein 305 2e-83
Os04g0410400 Root cap family protein 264 5e-71
Os01g0968200 Root cap family protein 148 3e-36
Os05g0552600 Root cap family protein 126 2e-29
Os11g0151100 Quinonprotein alcohol dehydrogenase-like domai... 105 2e-23
>Os01g0968400 Root cap family protein
Length = 248
Score = 483 bits (1243), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/248 (95%), Positives = 236/248 (95%)
Query: 1 MNSVMSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPA 60
MNSVMSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPA
Sbjct: 1 MNSVMSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPA 60
Query: 61 MKRDFTWIQSLGISFGDHRLYIGXXXXXXXXXXXXHVQITFDGEPVNVDAAKGAHWVSAA 120
MKRDFTWIQSLGISFGDHRLYIG HVQITFDGEPVNVDAAKGAHWVSAA
Sbjct: 61 MKRDFTWIQSLGISFGDHRLYIGARRAAEWDDDEDHVQITFDGEPVNVDAAKGAHWVSAA 120
Query: 121 LPSLSVSRTDTVNAVAVELDGVFAITANAVPITDDDSRIHHYGKTAKDTLVHLDLGYKFH 180
LPSLSVSRTDTVNAVAVELDGVFAITANAVPITDDDSRIHHYGKTAKDTLVHLDLGYKFH
Sbjct: 121 LPSLSVSRTDTVNAVAVELDGVFAITANAVPITDDDSRIHHYGKTAKDTLVHLDLGYKFH 180
Query: 181 ALSGDVDGVLGQTYRPTYANRLNITAKMPIMGGADKYRSSGLFSPDCAVSRFHRRRTAGD 240
ALSGDVDGVLGQTYRPTYANRLNITAKMPIMGGADKYRSSGLFSPDCAVSRFHRRRTAGD
Sbjct: 181 ALSGDVDGVLGQTYRPTYANRLNITAKMPIMGGADKYRSSGLFSPDCAVSRFHRRRTAGD 240
Query: 241 HVALGFAS 248
HVALGFAS
Sbjct: 241 HVALGFAS 248
>Os01g0968100 Root cap family protein
Length = 324
Score = 306 bits (785), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 144/229 (62%), Positives = 169/229 (73%)
Query: 7 VCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPAMKRDFT 66
+CD +PG SCGDPRFTG DGN FYFHGKK+ DFCIVSDADLHINAHFIG NP M RDFT
Sbjct: 85 MCDFYPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVSDADLHINAHFIGKRNPTMSRDFT 144
Query: 67 WIQSLGISFGDHRLYIGXXXXXXXXXXXXHVQITFDGEPVNVDAAKGAHWVSAALPSLSV 126
WIQ+LGI F DHRLY+G +++ FDG PV+V A GA W SAA+P L+V
Sbjct: 145 WIQALGIRFADHRLYMGALKTAKWNSDDDRLELAFDGAPVDVPAELGARWESAAVPGLTV 204
Query: 127 SRTDTVNAVAVELDGVFAITANAVPITDDDSRIHHYGKTAKDTLVHLDLGYKFHALSGDV 186
+RT NAV V+L GV I AN VPIT+ DSRIH+YG T +D+L HLDLG+KF+ LS DV
Sbjct: 205 TRTAATNAVRVQLAGVLDIMANVVPITEQDSRIHNYGVTEEDSLAHLDLGFKFYDLSDDV 264
Query: 187 DGVLGQTYRPTYANRLNITAKMPIMGGADKYRSSGLFSPDCAVSRFHRR 235
GVLGQTYR Y N L+++A MP+MGGA Y S +FS DCAV+RF RR
Sbjct: 265 HGVLGQTYRSDYVNNLSVSASMPVMGGAPSYVVSDIFSTDCAVARFGRR 313
>Os01g0968300 Root cap family protein
Length = 330
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 143/229 (62%), Positives = 170/229 (74%)
Query: 7 VCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPAMKRDFT 66
+CD +PG SCGDPRFTG DGN FYFHGKK+ DFCIVSDADLHINAHFIG NP M RDFT
Sbjct: 91 MCDFYPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVSDADLHINAHFIGKRNPTMSRDFT 150
Query: 67 WIQSLGISFGDHRLYIGXXXXXXXXXXXXHVQITFDGEPVNVDAAKGAHWVSAALPSLSV 126
WIQ+LGI F DHRLY+G +++ FDG PV+V A A W SAA+P L+V
Sbjct: 151 WIQALGIRFADHRLYMGALKTAKWSSDVDRLELAFDGAPVDVPAQLDARWESAAVPGLTV 210
Query: 127 SRTDTVNAVAVELDGVFAITANAVPITDDDSRIHHYGKTAKDTLVHLDLGYKFHALSGDV 186
+RT NAV V+L GVF I AN VPIT+ DSRIH+YG T +D+L HLDLG+KF+ LS DV
Sbjct: 211 TRTAATNAVRVQLAGVFDIMANVVPITEHDSRIHNYGVTEEDSLAHLDLGFKFYDLSDDV 270
Query: 187 DGVLGQTYRPTYANRLNITAKMPIMGGADKYRSSGLFSPDCAVSRFHRR 235
GVLGQTYR Y N+L+++A MP+MGGA Y +S +FS DCAV+RF R
Sbjct: 271 HGVLGQTYRSDYVNKLSVSASMPVMGGAPSYVASDIFSADCAVARFGHR 319
>Os04g0410400 Root cap family protein
Length = 355
Score = 264 bits (674), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 162/230 (70%), Gaps = 2/230 (0%)
Query: 4 VMSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPAMKR 63
++ +C+L GT C DPRF G DGN F FHG+K+ DFC++SDA+LHINAHFIG N A R
Sbjct: 92 LVCLCELT-GTECYDPRFVGGDGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAAAAR 150
Query: 64 DFTWIQSLGISFGDHRLYIGXXXXXXXXXXXXHVQITFDGEPVNVDAAKGAHWVSAALPS 123
DFTW+Q+LGI FG HRLY+G + ITFDG PV +DA A W A++P+
Sbjct: 151 DFTWVQALGIRFGGHRLYLGVRRTVRWDAAVDRLVITFDGAPVELDAVPAASWSPASVPA 210
Query: 124 LSVSRTDTVNAVAVELDGVFAITANAVPITDDDSRIHHYGKTAKDTLVHLDLGYKFHALS 183
LSV RT N V V LDG F I ANAVP+T++DSRIH YG TA D+L HL++ +KF+++S
Sbjct: 211 LSVFRTGPANGVVVRLDGRFRIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAFKFYSIS 270
Query: 184 GDVDGVLGQTYRPTYANR-LNITAKMPIMGGADKYRSSGLFSPDCAVSRF 232
DV GVLGQTYRP Y + +++ AK+P+MG A KY S +F+ DC V+RF
Sbjct: 271 ADVHGVLGQTYRPDYVSAGVDVGAKIPVMGSAGKYAVSDIFATDCEVARF 320
>Os01g0968200 Root cap family protein
Length = 208
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 68/82 (82%)
Query: 2 NSVMSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPAM 61
N M +CD +PG SCGDPRFTG DGN FYFHGKK+ DFCIVSDADLHINAHFIG NP M
Sbjct: 72 NQCMHLCDFYPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVSDADLHINAHFIGKRNPTM 131
Query: 62 KRDFTWIQSLGISFGDHRLYIG 83
RDFTWIQ+LGI F DHRLYIG
Sbjct: 132 SRDFTWIQALGIRFADHRLYIG 153
>Os05g0552600 Root cap family protein
Length = 425
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 80/121 (66%), Gaps = 4/121 (3%)
Query: 8 CDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPAMKRDFTW 67
C+L PG C DPRF G DGNTFYFHG++++DFC++SDA+LHIN HF+GNH P +KRD TW
Sbjct: 247 CNL-PGAVCQDPRFIGGDGNTFYFHGRRDRDFCLLSDANLHINGHFVGNHVPGLKRDPTW 305
Query: 68 IQSLGISF-GDHRLYIGXXXXXXXXXXXXHVQITFDGEPVNVDAAKGAHWVSAALPSLSV 126
+Q++ + F G HRLY+G + + FDGE V + + AH S+ + L V
Sbjct: 306 VQAIAVQFSGGHRLYVGARRTAVWDDDSDRLAVVFDGETVQLQ--RVAHARSSYVNRLDV 363
Query: 127 S 127
S
Sbjct: 364 S 364
>Os11g0151100 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 401
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 62/83 (74%), Gaps = 6/83 (7%)
Query: 5 MSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNP-AMKR 63
+ VC++ PG +CGDPRF G DGN FYFHG+++ DFC+VSD DLHINAHFIG M R
Sbjct: 110 VCVCNV-PG-ACGDPRFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSR 167
Query: 64 DFTWIQSLGISFGD---HRLYIG 83
DFTWIQ++ + F D HRLY+G
Sbjct: 168 DFTWIQAIAVLFDDGGAHRLYVG 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,618,675
Number of extensions: 342257
Number of successful extensions: 601
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 7
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)