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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0968300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Root cap family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.74 (0.0394) R2 : 0.561
β1 : 2.84 (0.146) R2dD : 0.401 R2D : 0.25
β2 : 0.713 (0.103) R2dC : 0.0582 R2C : -0.0767
β3 : -2.9 (0.168) R2dE : 0.396 R2E : 0.116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.28 (0.0871) R2dN8 : 0.0149 R2N8 : -0.0482
σ : 0.724
deviance : 241.52
__
_____
C
peak time of C : 11.4
E
wheather : temperature
threshold : 20.2
memory length : 4
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.06 0.726 4.77 2.51 0.699 -2.85 0.594 -1.89 0.193 11.3 19.6 9 -- --
241.61 0.724 4.73 2.81 0.71 -2.93 0.197 -- 0.293 11.4 20.2 11 -- --
239.83 0.721 4.76 2.62 0.704 -2.84 -- -1.36 0.219 11.3 19.6 3 -- --
241.52 0.724 4.74 2.84 0.713 -2.9 -- -- 0.28 11.4 20.2 4 -- --
264.75 0.758 4.8 2.46 -- -2.3 -- -1.53 0.115 -- 20.05 4 -- --
363.99 0.894 4.85 2.23 0.752 -- 1.39 -- -0.207 5.1 -- -- -- --
368.89 0.899 4.85 2.23 0.761 -- -- -- -0.214 5.13 -- -- -- --
265.8 0.759 4.77 2.73 -- -2.4 -- -- 0.196 -- 20.31 18 -- --
438.41 0.975 4.84 -- 0.515 -1.94 -- -- -0.179 9.21 20.7 4 -- --
399.25 0.934 4.86 2.26 -- -- -- -- -0.194 -- -- -- -- --
500.22 1.05 4.9 -- 0.8 -- -- -- -0.462 5.03 -- -- -- --
453.13 0.991 4.86 -- -- -1.78 -- -- -0.206 -- 21.71 4 -- --
533.9 1.08 4.91 -- -- -- -- -- -0.445 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.81 temperature 20 10 > th dose dependent rect. 1 23
5 237.51 temperature 30 270 < th dose dependent rect. 21 22
7 237.98 temperature 10 270 > th dose dependent rect. 1 23
9 238.15 temperature 20 720 > th dose dependent rect. 20 17
13 238.65 temperature 15 270 > th dose dependent rect. 15 23
20 239.33 temperature 20 10 > th dose dependent no NA NA
42 241.72 temperature 15 270 > th dose dependent rect. 3 23
44 241.76 temperature 20 720 > th dose dependent sin 6 NA
87 243.44 temperature 20 10 > th dose dependent rect. 21 23
88 243.46 temperature 20 10 > th dose dependent rect. 23 23
106 244.41 temperature 20 10 > th dose dependent rect. 15 23
107 244.45 temperature 15 270 > th dose dependent no NA NA
135 245.58 temperature 30 1440 < th dose dependent rect. 17 1
141 245.70 temperature 25 1440 < th dose independent rect. 13 9
149 245.80 temperature 10 720 > th dose dependent rect. 1 15
160 246.02 wind 9 43200 > th dose dependent rect. 18 12
161 246.03 temperature 25 1440 < th dose independent rect. 14 7
173 246.26 temperature 25 1440 > th dose independent rect. 14 7
196 246.65 temperature 30 270 < th dose dependent no NA NA
198 246.70 temperature 25 1440 > th dose independent rect. 13 9
215 246.96 temperature 20 10 > th dose dependent rect. 11 23
261 247.62 temperature 30 1440 < th dose dependent rect. 16 5
305 248.34 temperature 30 270 < th dose dependent rect. 17 23
307 248.38 temperature 25 1440 < th dose independent sin 18 NA
318 248.53 temperature 30 1440 < th dose dependent rect. 15 11
319 248.56 temperature 20 1440 > th dose dependent rect. 15 14
322 248.60 temperature 25 4320 < th dose independent rect. 19 2
325 248.62 temperature 20 1440 > th dose dependent rect. 11 19
326 248.62 temperature 30 720 < th dose dependent rect. 15 21
371 248.97 temperature 30 270 < th dose dependent rect. 7 23
379 249.00 temperature 20 1440 > th dose dependent sin 14 NA
382 249.01 temperature 30 270 < th dose dependent rect. 10 23
391 249.05 temperature 10 720 > th dose dependent rect. 10 23
427 249.26 temperature 25 1440 < th dose independent rect. 13 13
431 249.28 temperature 30 1440 < th dose dependent sin 16 NA
513 249.82 temperature 20 4320 > th dose dependent rect. 1 1
521 249.91 temperature 30 1440 < th dose dependent rect. 11 16
548 250.08 temperature 25 1440 < th dose independent rect. 1 21
577 250.28 temperature 25 1440 > th dose independent sin 18 NA
627 250.55 temperature 20 4320 > th dose dependent rect. 20 6
632 250.59 temperature 25 1440 > th dose independent rect. 13 13
671 250.82 temperature 30 10 < th dose dependent no NA NA
679 250.85 temperature 20 10 > th dose dependent rect. 6 23
680 250.86 temperature 20 4320 > th dose dependent rect. 21 1
696 250.95 temperature 25 1440 < th dose independent rect. 12 20
736 251.07 temperature 25 4320 > th dose independent rect. 19 3
764 251.15 temperature 30 10 < th dose dependent rect. 13 23
842 251.51 temperature 30 10 < th dose dependent rect. 7 23
843 251.51 temperature 30 10 < th dose dependent rect. 9 23
882 251.64 temperature 30 10 < th dose dependent rect. 11 23
921 251.82 temperature 20 10 > th dose dependent rect. 17 23
936 251.90 wind 9 43200 > th dose independent rect. 18 12
938 251.91 temperature 25 1440 < th dose independent rect. 7 21
955 251.96 temperature 30 4320 < th dose dependent rect. 21 1
965 251.97 temperature 30 10 < th dose dependent rect. 15 23
986 252.04 temperature 10 4320 > th dose dependent rect. 21 1