Os01g0968200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Root cap family protein.
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Os01g0968200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Root cap family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 429.65 | 0.974 | 3.33 | 0.00213 | 0.0421 | -3.37 | 0.471 | 16.2 | -0.205 | 0.222 | 48 | 148 | -- | -- |
| 454.54 | 0.993 | 3.41 | -0.192 | 0.0608 | -0.389 | 0.118 | -- | -0.216 | 14.4 | 52.42 | 413 | -- | -- |
| 430.4 | 0.966 | 3.34 | -0.0109 | 0.0495 | -3.52 | -- | 16.4 | -0.219 | 21.2 | 48.24 | 155 | -- | -- |
| 453.22 | 0.992 | 3.4 | -0.15 | 0.121 | -0.423 | -- | -- | -0.223 | 17.8 | 55.73 | 590 | -- | -- |
| 430.61 | 0.966 | 3.33 | -0.00477 | -- | -3.54 | -- | 16.5 | -0.209 | -- | 48.27 | 159 | -- | -- |
| 456.95 | 1 | 3.39 | -0.194 | 0.0165 | -- | -0.166 | -- | -0.195 | 10.1 | -- | -- | -- | -- |
| 457.05 | 1 | 3.39 | -0.2 | 0.0197 | -- | -- | -- | -0.195 | 12.3 | -- | -- | -- | -- |
| 451.38 | 0.99 | 3.42 | -0.146 | -- | -0.407 | -- | -- | -0.284 | -- | 55 | 1858 | -- | -- |
| 453.77 | 0.992 | 3.4 | -- | 0.127 | -0.437 | -- | -- | -0.219 | 18.2 | 55 | 593 | -- | -- |
| 457.07 | 0.999 | 3.39 | -0.201 | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
| 458.1 | 1 | 3.39 | -- | 0.0227 | -- | -- | -- | -0.173 | 12.8 | -- | -- | -- | -- |
| 451.04 | 0.989 | 3.42 | -- | -- | -0.429 | -- | -- | -0.306 | -- | 61.05 | 1895 | -- | -- |
| 458.14 | 0.999 | 3.39 | -- | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 420.13 | humidity | 50 | 90 | < th | dose independent | rect. | 12 | 6 |
| 18 | 420.62 | humidity | 50 | 270 | < th | dose dependent | sin | 8 | NA |
| 37 | 421.52 | humidity | 50 | 90 | < th | dose dependent | rect. | 12 | 6 |
| 73 | 422.04 | radiation | 30 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 96 | 422.50 | humidity | 50 | 10 | < th | dose independent | sin | 12 | NA |
| 97 | 422.59 | humidity | 50 | 10 | > th | dose independent | sin | 12 | NA |
| 137 | 422.97 | humidity | 50 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 138 | 422.98 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 1 |
| 177 | 423.30 | wind | 3 | 270 | > th | dose independent | rect. | 12 | 1 |
| 203 | 424.04 | humidity | 50 | 270 | < th | dose independent | sin | 7 | NA |
| 204 | 424.07 | humidity | 50 | 10 | < th | dose dependent | sin | 12 | NA |
| 206 | 424.40 | radiation | 30 | 720 | > th | dose independent | rect. | 16 | 16 |
| 226 | 424.55 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 1 |
| 271 | 425.41 | radiation | 30 | 720 | > th | dose independent | rect. | 7 | 1 |
| 290 | 426.27 | humidity | 50 | 90 | < th | dose independent | sin | 14 | NA |
| 339 | 427.57 | humidity | 50 | 90 | > th | dose independent | sin | 14 | NA |
| 341 | 427.78 | wind | 1 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 346 | 427.93 | radiation | 20 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 356 | 428.88 | humidity | 50 | 90 | < th | dose dependent | sin | 15 | NA |
| 378 | 429.14 | humidity | 80 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 393 | 429.69 | wind | 1 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 489 | 431.03 | wind | 5 | 10 | > th | dose independent | rect. | 24 | 2 |
| 493 | 431.03 | wind | 5 | 10 | > th | dose dependent | rect. | 24 | 2 |
| 518 | 431.25 | radiation | 30 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 540 | 431.46 | humidity | 70 | 90 | < th | dose independent | rect. | 12 | 4 |
| 558 | 432.16 | wind | 1 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 632 | 432.88 | wind | 7 | 10 | < th | dose independent | rect. | 4 | 8 |
| 682 | 433.33 | humidity | 80 | 10 | < th | dose dependent | rect. | 17 | 16 |
| 691 | 433.51 | wind | 5 | 10 | > th | dose dependent | rect. | 22 | 5 |
| 798 | 434.48 | humidity | 80 | 90 | < th | dose dependent | rect. | 16 | 20 |
| 801 | 434.49 | radiation | 1 | 90 | > th | dose dependent | rect. | 12 | 4 |
| 802 | 434.50 | radiation | 20 | 90 | > th | dose independent | rect. | 12 | 3 |
| 803 | 434.53 | wind | 7 | 90 | < th | dose independent | rect. | 3 | 9 |
| 818 | 434.77 | wind | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 819 | 434.77 | wind | 1 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 842 | 434.89 | humidity | 50 | 270 | < th | dose independent | sin | 0 | NA |
| 855 | 435.06 | wind | 1 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 869 | 435.29 | humidity | 70 | 90 | < th | dose independent | rect. | 16 | 20 |
| 880 | 435.41 | temperature | 30 | 90 | < th | dose independent | sin | 18 | NA |
| 892 | 435.45 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 16 |
| 919 | 435.51 | temperature | 30 | 90 | > th | dose independent | rect. | 14 | 22 |
| 922 | 435.53 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |