Os01g0968100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Root cap family protein.
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Os01g0968100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Root cap family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.15 | 0.376 | 2.8 | 0.0536 | 0.116 | -0.244 | -0.278 | 2.71 | 0.127 | 4.37 | 0.4316 | 9 | -- | -- |
| 66.08 | 0.379 | 2.8 | 0.0394 | 0.0981 | 0.343 | -0.163 | -- | 0.136 | 4.26 | 0.03473 | 8 | -- | -- |
| 64.27 | 0.373 | 2.8 | 0.0624 | 0.114 | -0.289 | -- | 2.74 | 0.129 | 4.06 | 0.1238 | 8 | -- | -- |
| 66.14 | 0.379 | 2.8 | 0.0432 | 0.0979 | 0.326 | -- | -- | 0.137 | 3.59 | 0.09154 | 8 | -- | -- |
| 64.93 | 0.375 | 2.8 | 0.0629 | -- | -0.196 | -- | 2.64 | 0.135 | -- | 0.102 | 8 | -- | -- |
| 66.7 | 0.383 | 2.8 | 0.0589 | 0.119 | -- | -0.0684 | -- | 0.13 | 3.73 | -- | -- | -- | -- |
| 66.71 | 0.382 | 2.8 | 0.0599 | 0.118 | -- | -- | -- | 0.13 | 3.49 | -- | -- | -- | -- |
| 66.65 | 0.38 | 2.8 | 0.044 | -- | 0.387 | -- | -- | 0.141 | -- | 0.1078 | 8 | -- | -- |
| 66.19 | 0.379 | 2.8 | -- | 0.098 | 0.337 | -- | -- | 0.132 | 3.59 | 0.07943 | 8 | -- | -- |
| 67.49 | 0.384 | 2.8 | 0.0649 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 66.8 | 0.382 | 2.81 | -- | 0.12 | -- | -- | -- | 0.123 | 3.48 | -- | -- | -- | -- |
| 66.7 | 0.38 | 2.8 | -- | -- | 0.398 | -- | -- | 0.136 | -- | 0.0925 | 8 | -- | -- |
| 67.61 | 0.384 | 2.81 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.51 | wind | 1.0 | 10 | < th | dose independent | rect. | 23 | 1 |
| 5 | 63.51 | wind | 1.0 | 10 | < th | dose dependent | rect. | 23 | 1 |
| 9 | 63.55 | radiation | 10.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 13 | 63.55 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 5 |
| 31 | 63.66 | wind | 1.0 | 10 | < th | dose dependent | rect. | 15 | 10 |
| 43 | 63.69 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 2 |
| 75 | 63.78 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 110 | 63.88 | wind | 1.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 111 | 63.88 | wind | 1.0 | 30 | < th | dose dependent | rect. | 15 | 13 |
| 283 | 64.13 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 302 | 64.15 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 13 |
| 307 | 64.15 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 308 | 64.16 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 309 | 64.16 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 325 | 64.16 | humidity | 80.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 391 | 64.16 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 392 | 64.16 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 396 | 64.16 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 516 | 64.16 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 771 | 64.22 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 772 | 64.22 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 773 | 64.22 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 775 | 64.22 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 776 | 64.22 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 779 | 64.22 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 782 | 64.22 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 784 | 64.22 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 789 | 64.22 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 790 | 64.22 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 791 | 64.22 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 792 | 64.22 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 794 | 64.22 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 799 | 64.22 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 806 | 64.23 | wind | 1.0 | 90 | > th | dose independent | rect. | 19 | 13 |
| 808 | 64.23 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 809 | 64.23 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 811 | 64.23 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 836 | 64.24 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 843 | 64.24 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 871 | 64.25 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 872 | 64.25 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 885 | 64.25 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 23 |
| 886 | 64.26 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 889 | 64.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 893 | 64.26 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 899 | 64.26 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 900 | 64.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 920 | 64.26 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 934 | 64.27 | wind | 1.0 | 30 | < th | dose independent | sin | 14 | NA |
| 940 | 64.27 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 942 | 64.27 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 950 | 64.28 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 964 | 64.29 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 970 | 64.29 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 5 |