FiT-DB / Search/ Help/ Sample detail

Os04g0410400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Root cap family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.54 (0.0356) R2 : 0.47
β1 : -1.39 (0.129) R2dD : 0.158 R2D : -0.0546
β2 : 1.12 (0.08) R2dC : 0.226 R2C : 0.137
β3 : 23.1 (2.04) R2dE : 4.75 R2E : -4.68
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -79.5 (7.11) R2dD*E : 4.62 R2D*E : -4.49
γ1 : -0.37 (0.0713) R2dN8 : 0.0417 R2N8 : 0.000723
σ : 0.622
deviance : 178.18
__
_____
C
peak time of C : 13.6
E
wheather : precipitation
threshold : 0.03985
memory length : 388
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.93
open length of G : 2.29

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.49 0.636 6.52 -1.34 1.18 22.6 -0.276 -78.1 -0.391 13.7 -0.001113 297 2 2.05
230.25 0.712 6.39 -0.89 1.07 -0.094 -0.232 -- -0.448 12.9 -0.001113 297 2 2.05
178.18 0.622 6.54 -1.39 1.12 23.1 -- -79.5 -0.37 13.6 0.03985 388 1.93 2.29
229.36 0.705 6.39 -0.905 1.09 0.524 -- -- -0.456 13.2 -0.02112 350 2.03 1.92
253.87 0.742 6.54 -1.42 -- 22.8 -- -78.9 -0.383 -- 0.07984 388 1.94 2.23
230.26 0.711 6.39 -0.891 1.07 -- -0.229 -- -0.448 12.9 -- -- -- --
230.45 0.711 6.39 -0.899 1.07 -- -- -- -0.448 13 -- -- -- --
228.75 0.704 6.41 -0.914 -- 1.08 -- -- -0.476 -- -2.676 878 2.1 7.38
251.46 0.739 6.37 -- 1.1 0.439 -- -- -0.356 13 0.09299 266 2.11 2.15
302 0.812 6.41 -0.939 -- -- -- -- -0.469 -- -- -- -- --
251.74 0.742 6.37 -- 1.09 -- -- -- -0.348 13 -- -- -- --
249.84 0.736 6.38 -- -- 1.06 -- -- -0.356 -- -1.79 824 3.18 6.1
325.27 0.842 6.38 -- -- -- -- -- -0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.13 temperature 20.0 270 > th dose independent rect. 24 9
7 192.12 precipitation 0.1 270 > th dose independent rect. 2 2
8 192.12 precipitation 0.1 270 > th dose dependent rect. 2 2
13 193.39 wind 1.0 720 > th dose dependent rect. 21 2
15 193.95 precipitation 0.1 270 > th dose independent rect. 24 4
16 193.95 precipitation 0.1 270 > th dose dependent rect. 24 4
20 194.46 wind 3.0 270 > th dose dependent rect. 2 6
38 196.32 temperature 20.0 270 > th dose independent rect. 3 14
40 196.43 precipitation 0.1 270 < th dose independent sin 10 NA
41 196.43 precipitation 0.1 270 < th dose dependent sin 10 NA
44 196.53 wind 3.0 270 > th dose independent rect. 2 6
45 196.58 temperature 20.0 270 > th dose independent sin 5 NA
77 197.84 wind 1.0 720 > th dose dependent rect. 20 7
79 197.89 wind 3.0 720 > th dose independent rect. 21 2
86 198.15 wind 3.0 270 > th dose dependent rect. 5 1
87 198.18 wind 7.0 720 < th dose independent sin 11 NA
117 198.75 wind 9.0 720 < th dose dependent rect. 15 8
123 198.94 wind 3.0 720 > th dose dependent rect. 20 12
125 199.00 wind 9.0 720 < th dose dependent rect. 17 6
169 199.96 wind 5.0 720 < th dose independent rect. 18 9
215 200.50 wind 1.0 720 > th dose dependent sin 11 NA
216 200.54 radiation 10.0 14400 < th dose dependent rect. 19 9
239 200.85 wind 3.0 720 > th dose independent rect. 20 10
241 200.87 wind 7.0 720 < th dose independent rect. 15 15
243 200.88 radiation 30.0 43200 < th dose independent rect. 17 11
249 200.96 wind 7.0 720 < th dose independent rect. 17 16
251 201.01 wind 9.0 720 < th dose dependent rect. 8 15
315 201.71 wind 3.0 270 > th dose independent rect. 4 2
319 201.80 wind 9.0 720 < th dose dependent sin 18 NA
342 202.02 wind 5.0 30 < th dose independent sin 10 NA
369 202.23 wind 9.0 4320 < th dose independent rect. 16 9
370 202.23 wind 9.0 4320 < th dose independent rect. 16 11
376 202.26 wind 7.0 4320 > th dose dependent rect. 17 1
380 202.29 temperature 20.0 270 > th dose independent rect. 5 1
420 202.60 wind 9.0 10 < th dose dependent sin 13 NA
430 202.71 wind 9.0 4320 < th dose independent rect. 17 4
476 202.96 temperature 10.0 270 > th dose dependent rect. 24 9
491 203.04 atmosphere 1015.0 270 < th dose dependent rect. 24 8
522 203.22 wind 5.0 10 > th dose dependent rect. 4 4
567 203.48 radiation 20.0 270 < th dose independent rect. 24 9
584 203.55 atmosphere 1015.0 90 < th dose dependent rect. 2 7
690 204.00 wind 9.0 4320 > th dose independent rect. 17 4
702 204.03 wind 7.0 720 < th dose independent rect. 8 17
706 204.04 wind 7.0 4320 > th dose dependent rect. 17 3
713 204.06 wind 9.0 4320 > th dose independent rect. 17 1
742 204.16 wind 3.0 720 > th dose independent sin 11 NA
749 204.19 wind 9.0 10 < th dose dependent rect. 16 11
755 204.22 radiation 30.0 270 < th dose dependent rect. 1 8
765 204.28 wind 9.0 4320 > th dose independent rect. 16 8
771 204.29 wind 7.0 4320 > th dose dependent rect. 16 9
793 204.33 wind 9.0 10 < th dose dependent rect. 18 9
813 204.38 wind 9.0 720 < th dose dependent rect. 4 16
964 204.85 radiation 30.0 10 < th dose independent rect. 3 7