BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0410400 Os04g0410400|AK108077
(355 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19430.1 | chr3:6736382-6738330 REVERSE LENGTH=560 265 3e-71
AT5G60520.1 | chr5:24331787-24332947 REVERSE LENGTH=339 204 5e-53
AT5G54370.1 | chr5:22075334-22076567 FORWARD LENGTH=338 204 8e-53
AT5G60530.1 | chr5:24334197-24335685 REVERSE LENGTH=440 196 1e-50
AT4G27400.1 | chr4:13705341-13706637 FORWARD LENGTH=342 196 2e-50
AT1G54890.1 | chr1:20463107-20464407 FORWARD LENGTH=348 187 7e-48
>AT3G19430.1 | chr3:6736382-6738330 REVERSE LENGTH=560
Length = 559
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 191/323 (59%), Gaps = 17/323 (5%)
Query: 42 PIYMTPGSSPTVAS------CYNQNNTASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCL 95
P Y+ P S A+ C Q + G + T P CPR C+ V C TCK VC
Sbjct: 245 PPYVPPPSDEEEAAGAKRVRCKKQRSPCYGVEYTC-PADCPRSCQ----VDCVTCKPVCN 299
Query: 96 CELTGTECYDPRFVGGDGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAAAARDFTWV 155
C+ G+ C DPRF+GGDG F FHG+KD++FCL+SD NLHINAHFIGKR A ARDFTWV
Sbjct: 300 CDKPGSVCQDPRFIGGDGLTFYFHGKKDSNFCLISDPNLHINAHFIGKRRAGMARDFTWV 359
Query: 156 QALGIRFGGHRLYLGVRRTVRWDAAVDRLVITFDGAPV---ELDXXXXXXXXXXXXXXXX 212
Q++ I FG HRLY+G +T WD +VDR+ ++FDG + +LD
Sbjct: 360 QSIAILFGTHRLYVGALKTATWDDSVDRIAVSFDGNVISLPQLDGARWTSSPGVYPEVSV 419
Query: 213 XFRTGPANGVVVRLDGRFRIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAFKFYSISAD 272
N + V ++G +I A VP+T EDSRIHGY + DD LAHL++ FKF +S +
Sbjct: 420 KRVNTDTNNLEVEVEGLLKITARVVPITMEDSRIHGYDVKEDDCLAHLDLGFKFQDLSDN 479
Query: 273 VHGVLGQTYRPDYVSAGVDVGAKIPVMGSAGKYAVSDIFATDCEVARFAGEDGALASSVG 332
V GVLGQTYR +YVS V +G +PVMG ++ + +FA DC ARF G +G +
Sbjct: 480 VDGVLGQTYRSNYVSR-VKIGVHMPVMGGDREFQTTGLFAPDCSAARFTG-NGDSNNGRS 537
Query: 333 MVDAPADALCGSGKGSAGLVCKK 355
++ P + C SG G G+VCK+
Sbjct: 538 KLELP-EMSCASGLGGKGVVCKR 559
>AT5G60520.1 | chr5:24331787-24332947 REVERSE LENGTH=339
Length = 338
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 146/275 (53%), Gaps = 18/275 (6%)
Query: 68 CTVEPRACPRGCRDM----------CYVHCPT-CKLVCL-----CELTGTECYDPRFVGG 111
C + CP+ C + C++ C + C++ C C G+ CYDPRFVGG
Sbjct: 59 CNQKILTCPKECPERKPKMNKKKKACFIDCSSKCEVTCKWRKANCNGYGSLCYDPRFVGG 118
Query: 112 DGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAAAARDFTWVQALGIRFGGHRLYLGV 171
DG F FHG KD +F ++SD NL INAHFIG R A RDFTWVQA + F H L +
Sbjct: 119 DGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPAGRTRDFTWVQAFSVMFDSHNLVIAA 178
Query: 172 RRTVRWDAAVDRLVITFDGAPVELDXXXXXXXXXXXXXXXXXF-RTGPANGVVVRLDGRF 230
++ WD +VD LV+ ++G VE+ RT N V V + G
Sbjct: 179 KKVASWDDSVDSLVVRWNGEEVEVPTEGEAEWRIDLDEREVIVERTDERNNVRVTVSGIV 238
Query: 231 RIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAGV 290
+I P+ +E+ R+H Y L DD+ AHL FKF+++S V GVLG+TYRP YVS V
Sbjct: 239 QIDIQVRPIGKEEDRVHKYQLPKDDAFAHLETQFKFFNLSDLVEGVLGKTYRPGYVSP-V 297
Query: 291 DVGAKIPVMGSAGKYAVSDIFATDCEVARFAGEDG 325
G +P+MG KY +F+ C V RF G+ G
Sbjct: 298 KTGVPMPMMGGEDKYQTPSLFSPLCNVCRFQGKTG 332
>AT5G54370.1 | chr5:22075334-22076567 FORWARD LENGTH=338
Length = 337
Score = 204 bits (518), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 155/297 (52%), Gaps = 16/297 (5%)
Query: 72 PRACPRGC-----RDMCYVHC--PTCKLVCL-----CELTGTECYDPRFVGGDGNKFLFH 119
P CP +CY C PTCK C C G+ CYDPRF+GGDG F FH
Sbjct: 44 PEECPSKTAMNSKNKVCYADCDRPTCKSQCRMRKPNCNRPGSACYDPRFIGGDGIVFYFH 103
Query: 120 GRKDADFCLLSDANLHINAHFIGKRNAAAARDFTWVQALGIRFGGHRLYLGVRRTVRWDA 179
G+ + +F L+SD++L IN FIG R A ARDFTW+QALG F ++ L +T WD
Sbjct: 104 GKSNEEFSLVSDSDLQINGRFIGHRPAGRARDFTWIQALGFLFNSNKFSLEAAKTASWDN 163
Query: 180 AVDRLVITFDGAPVELDXXXXXXXXXXXXXXXXXFRTGPANGVVVRLDGRFRIVANAVPV 239
+D L ++DG + + R N V+V + + I+ N VPV
Sbjct: 164 EIDHLKFSYDGQDLSVPEETLSTWYSPNKDIKIE-RVSMRNSVIVTIKDKAEIMINVVPV 222
Query: 240 TEEDSRIHGYGLTADDSLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAGVDVGAKIPVM 299
T+ED RIH Y + +DD AHL V F+F+++S V G+LG+TYRPD+ + G +PV+
Sbjct: 223 TKEDDRIHSYKVPSDDCFAHLEVQFRFFNLSPKVDGILGRTYRPDFQNPA-KPGVAMPVV 281
Query: 300 GSAGKYAVSDIFATDCEVARFAGEDGALASSVGMVD-APADALCGSGKGSAGLVCKK 355
G + S + + DC+ F+ + S ++ A D G+ G G+VC+K
Sbjct: 282 GGEDSFKTSSLLSNDCKTCIFSESQAEIDSVKSEIEYATLDCTRGASSG-YGIVCRK 337
>AT5G60530.1 | chr5:24334197-24335685 REVERSE LENGTH=440
Length = 439
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 142/287 (49%), Gaps = 16/287 (5%)
Query: 47 PGSSPTVASCYNQNNTASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCLCELTGTECYDP 106
PG P N+N DCT + C C K C G+ CYDP
Sbjct: 167 PGECPKRKPTKNKNTKGCFIDCT-----------NKCEATCKWRKTNC--NGYGSLCYDP 213
Query: 107 RFVGGDGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAAAARDFTWVQALGIRFGGHR 166
RFVGGDG F FHG K +F ++SD NL INAHFIG R RDFTWVQAL + F H+
Sbjct: 214 RFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRTRDFTWVQALNVMFENHK 273
Query: 167 LYLGVRRTVRWDAAVDRLVITFDGAPVEL--DXXXXXXXXXXXXXXXXXFRTGPANGVVV 224
L + R +WD D I +DG + L D RT N V V
Sbjct: 274 LVITANRVNQWDETSDAFTIRYDGELITLPEDEQSEWREISGQKKDIIIERTDERNSVRV 333
Query: 225 RLDGRFRIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAFKFYSISADVHGVLGQTYRPD 284
+ ++ P+ +E++R+H Y L DD+ AHL FKF +S V GVLG+TYRPD
Sbjct: 334 LVSDLVQMDIRVRPIGKEENRVHNYQLPQDDAFAHLETQFKFLDLSELVEGVLGKTYRPD 393
Query: 285 YVSAGVDVGAKIPVMGSAGKYAVSDIFATDCEVARFAGEDGALASSV 331
YVS+ G +PV+G KY +F+ C + RF ++ +L++ +
Sbjct: 394 YVSSA-KTGVPMPVLGGEDKYQTPSLFSPTCRLCRFKPQEESLSADI 439
>AT4G27400.1 | chr4:13705341-13706637 FORWARD LENGTH=342
Length = 341
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 159/330 (48%), Gaps = 30/330 (9%)
Query: 53 VASCYNQNNTASG---------PDCTVEPRACPRGC---------RDMCYVHC--PTCKL 92
VASC+ G P C + CP C +C+V C P C+
Sbjct: 15 VASCFLHVKAWHGQTYCGGNATPRCQLRYIDCPEECPTEMFPNSQNKICWVDCFKPLCEA 74
Query: 93 VCL-----CELTGTECYDPRFVGGDGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAA 147
VC CE G+ C DPRF+GGDG F FHG+ + F ++SD + INA F G R A
Sbjct: 75 VCRAVKPNCESYGSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAG 134
Query: 148 AARDFTWVQALGIRFGGHRLYLGVRRTVRWDAAVDRLVITFDGAPVELDXXXXXXXXXXX 207
RDFTW+QALG F H+ L + WD+ +D L T DG + +
Sbjct: 135 RTRDFTWIQALGFLFNSHKFSLETTKVATWDSNLDHLKFTIDGQDLIIPQETLSTWYSSD 194
Query: 208 XXXXXXFRTGPANGVVVRLDGRFRIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAFKFY 267
R N V+V + + I+ N VPVT+ED RIH Y L DD AH V FKF
Sbjct: 195 KDIKIE-RLTEKNSVIVTIKDKAEIMVNVVPVTKEDDRIHNYKLPVDDCFAHFEVQFKFI 253
Query: 268 SISADVHGVLGQTYRPDYVSAGVDVGAKIPVMGSAGKYAVSDIFATDCEVARFAGEDGAL 327
++S V G+LG+TYRPD+ + G +PV+G + S + + C+ F+ ED A+
Sbjct: 254 NLSPKVDGILGRTYRPDFKNPA-KPGVVMPVVGGEDSFRTSSLLSHVCKTCLFS-EDPAV 311
Query: 328 AS-SVGMVDAPADALCGSGKGSA-GLVCKK 355
AS SV A C G S GLVC+K
Sbjct: 312 ASGSVKPKSTYALLDCSRGASSGYGLVCRK 341
>AT1G54890.1 | chr1:20463107-20464407 FORWARD LENGTH=348
Length = 347
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 150/307 (48%), Gaps = 20/307 (6%)
Query: 68 CTVEPRACPRGCRDM---------CYVHC--PTCKLVCL-----CELTGTECYDPRFVGG 111
C ++ + CP+ C C + C P CK C C G+ C DPRF+GG
Sbjct: 42 CFLKKQTCPKQCPSFSPPNGSTKACVIDCFNPICKATCRNRKPNCNGKGSACLDPRFIGG 101
Query: 112 DGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAAAARDFTWVQALGIRFG--GHRLYL 169
DG F FHG++D F L+SD + +NA FIG R ARDFTW+Q+LG+ FG L
Sbjct: 102 DGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRARDFTWIQSLGLIFGPNSKTFSL 161
Query: 170 GVRRTVRWDAAVDRLVITFDGAPVELDXXXXXXXXXXXXXXXXXFRTGPANGVVVRLDGR 229
+ +WD VD L ++++G + L RT N V+V L
Sbjct: 162 EATKAEKWDHQVDHLRLSYEGKEISLPKGDTSVWSPPLGDYIKIERTSDINSVLVTLQDI 221
Query: 230 FRIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAG 289
I N VPVT+ED IH YG+ DD AHL V F+F +S++V GVLG+TY+ D+ +
Sbjct: 222 AEIWINVVPVTKEDDIIHKYGIPEDDCFAHLEVQFRFLKLSSNVEGVLGRTYKEDFKNPA 281
Query: 290 VDVGAKIPVMGSAGKYAVSDIFATDCEVARFAGEDGALASSVGMVDAPADALCGSGKGS- 348
G +PV+G KY + + T C ++G +L ++ C G S
Sbjct: 282 -KPGVAMPVVGGEDKYRTASLLETSCNACVYSGGSRSLDKIEPLLLNQNTVDCTGGSSSG 340
Query: 349 AGLVCKK 355
G+ C+K
Sbjct: 341 VGIFCRK 347
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,617,378
Number of extensions: 319046
Number of successful extensions: 581
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 6
Length of query: 355
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,364,969
Effective search space: 2133067095
Effective search space used: 2133067095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)