BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0410400 Os04g0410400|AK108077
(355 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0410400 Root cap family protein 643 0.0
Os01g0968300 Root cap family protein 296 2e-80
Os01g0968100 Root cap family protein 293 1e-79
Os01g0968400 Root cap family protein 257 1e-68
Os11g0151100 Quinonprotein alcohol dehydrogenase-like domai... 142 5e-34
Os01g0968200 Root cap family protein 140 1e-33
Os05g0552600 Root cap family protein 140 1e-33
>Os04g0410400 Root cap family protein
Length = 355
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/355 (90%), Positives = 320/355 (90%)
Query: 1 MVPVRPSXXXXXXXXXXXXXXXXXXQPLSPDSPILRDPNVIPIYMTPGSSPTVASCYNQN 60
MVPVRPS QPLSPDSPILRDPNVIPIYMTPGSSPTVASCYNQN
Sbjct: 1 MVPVRPSAAALLLAATAFLVVAVGAQPLSPDSPILRDPNVIPIYMTPGSSPTVASCYNQN 60
Query: 61 NTASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCLCELTGTECYDPRFVGGDGNKFLFHG 120
NTASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCLCELTGTECYDPRFVGGDGNKFLFHG
Sbjct: 61 NTASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCLCELTGTECYDPRFVGGDGNKFLFHG 120
Query: 121 RKDADFCLLSDANLHINAHFIGKRNAAAARDFTWVQALGIRFGGHRLYLGVRRTVRWDAA 180
RKDADFCLLSDANLHINAHFIGKRNAAAARDFTWVQALGIRFGGHRLYLGVRRTVRWDAA
Sbjct: 121 RKDADFCLLSDANLHINAHFIGKRNAAAARDFTWVQALGIRFGGHRLYLGVRRTVRWDAA 180
Query: 181 VDRLVITFDGAPVELDXXXXXXXXXXXXXXXXXFRTGPANGVVVRLDGRFRIVANAVPVT 240
VDRLVITFDGAPVELD FRTGPANGVVVRLDGRFRIVANAVPVT
Sbjct: 181 VDRLVITFDGAPVELDAVPAASWSPASVPALSVFRTGPANGVVVRLDGRFRIVANAVPVT 240
Query: 241 EEDSRIHGYGLTADDSLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAGVDVGAKIPVMG 300
EEDSRIHGYGLTADDSLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAGVDVGAKIPVMG
Sbjct: 241 EEDSRIHGYGLTADDSLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAGVDVGAKIPVMG 300
Query: 301 SAGKYAVSDIFATDCEVARFAGEDGALASSVGMVDAPADALCGSGKGSAGLVCKK 355
SAGKYAVSDIFATDCEVARFAGEDGALASSVGMVDAPADALCGSGKGSAGLVCKK
Sbjct: 301 SAGKYAVSDIFATDCEVARFAGEDGALASSVGMVDAPADALCGSGKGSAGLVCKK 355
>Os01g0968300 Root cap family protein
Length = 330
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 187/301 (62%), Gaps = 14/301 (4%)
Query: 33 PILRDPNVIPIY--MTPGSS-----PTVASCYNQNNTASGPDCTVEPRACPRGCRDMCYV 85
P P + P Y + PGSS SC + G C + C + C + C V
Sbjct: 27 PPASHPRLPPNYHMINPGSSGLGKRDQELSCADTKGKKKG--CMAK---CDKRCPNQCIV 81
Query: 86 HCPTCKLVCLCELT-GTECYDPRFVGGDGNKFLFHGRKDADFCLLSDANLHINAHFIGKR 144
CP+CK C+C+ G C DPRF GGDGN F FHG+KD DFC++SDA+LHINAHFIGKR
Sbjct: 82 MCPSCKTFCMCDFYPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVSDADLHINAHFIGKR 141
Query: 145 NAAAARDFTWVQALGIRFGGHRLYLGVRRTVRWDAAVDRLVITFDGAPVELDXXXXXXXX 204
N +RDFTW+QALGIRF HRLY+G +T +W + VDRL + FDGAPV++
Sbjct: 142 NPTMSRDFTWIQALGIRFADHRLYMGALKTAKWSSDVDRLELAFDGAPVDVPAQLDARWE 201
Query: 205 XXXXXXXXXFRTGPANGVVVRLDGRFRIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAF 264
RT N V V+L G F I+AN VP+TE DSRIH YG+T +DSLAHL++ F
Sbjct: 202 SAAVPGLTVTRTAATNAVRVQLAGVFDIMANVVPITEHDSRIHNYGVTEEDSLAHLDLGF 261
Query: 265 KFYSISADVHGVLGQTYRPDYVSAGVDVGAKIPVMGSAGKYAVSDIFATDCEVARFAGED 324
KFY +S DVHGVLGQTYR DYV+ + V A +PVMG A Y SDIF+ DC VARF
Sbjct: 262 KFYDLSDDVHGVLGQTYRSDYVNK-LSVSASMPVMGGAPSYVASDIFSADCAVARFGHRA 320
Query: 325 G 325
G
Sbjct: 321 G 321
>Os01g0968100 Root cap family protein
Length = 324
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/252 (55%), Positives = 172/252 (68%), Gaps = 2/252 (0%)
Query: 75 CPRGCRDMCYVHCPTCKLVCLCELT-GTECYDPRFVGGDGNKFLFHGRKDADFCLLSDAN 133
C + C + C V CP CK C+C+ G C DPRF GGDGN F FHG+KD DFC++SDA+
Sbjct: 65 CDKRCPNQCIVMCPGCKTFCMCDFYPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVSDAD 124
Query: 134 LHINAHFIGKRNAAAARDFTWVQALGIRFGGHRLYLGVRRTVRWDAAVDRLVITFDGAPV 193
LHINAHFIGKRN +RDFTW+QALGIRF HRLY+G +T +W++ DRL + FDGAPV
Sbjct: 125 LHINAHFIGKRNPTMSRDFTWIQALGIRFADHRLYMGALKTAKWNSDDDRLELAFDGAPV 184
Query: 194 ELDXXXXXXXXXXXXXXXXXFRTGPANGVVVRLDGRFRIVANAVPVTEEDSRIHGYGLTA 253
++ RT N V V+L G I+AN VP+TE+DSRIH YG+T
Sbjct: 185 DVPAELGARWESAAVPGLTVTRTAATNAVRVQLAGVLDIMANVVPITEQDSRIHNYGVTE 244
Query: 254 DDSLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAGVDVGAKIPVMGSAGKYAVSDIFAT 313
+DSLAHL++ FKFY +S DVHGVLGQTYR DYV+ + V A +PVMG A Y VSDIF+T
Sbjct: 245 EDSLAHLDLGFKFYDLSDDVHGVLGQTYRSDYVN-NLSVSASMPVMGGAPSYVVSDIFST 303
Query: 314 DCEVARFAGEDG 325
DC VARF G
Sbjct: 304 DCAVARFGRRAG 315
>Os01g0968400 Root cap family protein
Length = 248
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 156/230 (67%), Gaps = 2/230 (0%)
Query: 92 LVCLCELT-GTECYDPRFVGGDGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAAAAR 150
++ +C+L GT C DPRF G DGN F FHG+K+ DFC++SDA+LHINAHFIG N A R
Sbjct: 4 VMSVCDLFPGTSCGDPRFTGADGNTFYFHGKKEQDFCIVSDADLHINAHFIGNHNPAMKR 63
Query: 151 DFTWVQALGIRFGGHRLYLGVRRTVRWDAAVDRLVITFDGAPVELDXXXXXXXXXXXXXX 210
DFTW+Q+LGI FG HRLY+G RR WD D + ITFDG PV +D
Sbjct: 64 DFTWIQSLGISFGDHRLYIGARRAAEWDDDEDHVQITFDGEPVNVDAAKGAHWVSAALPS 123
Query: 211 XXXFRTGPANGVVVRLDGRFRIVANAVPVTEEDSRIHGYGLTADDSLAHLNVAFKFYSIS 270
RT N V V LDG F I ANAVP+T++DSRIH YG TA D+L HL++ +KF+++S
Sbjct: 124 LSVSRTDTVNAVAVELDGVFAITANAVPITDDDSRIHHYGKTAKDTLVHLDLGYKFHALS 183
Query: 271 ADVHGVLGQTYRPDYVSAGVDVGAKIPVMGSAGKYAVSDIFATDCEVARF 320
DV GVLGQTYRP Y + +++ AK+P+MG A KY S +F+ DC V+RF
Sbjct: 184 GDVDGVLGQTYRPTYANR-LNITAKMPIMGGADKYRSSGLFSPDCAVSRF 232
>Os11g0151100 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 401
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 59 QNNTASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCLCELTGTECYDPRFVGGDGNKFLF 118
Q + P C+ + CP C C+V C CK VC+C + G C DPRF+GGDGN F F
Sbjct: 76 QESRKLYPYCSAKMMECPDTCPTSCFVDCDACKPVCVCNVPGA-CGDPRFIGGDGNAFYF 134
Query: 119 HGRKDADFCLLSDANLHINAHFIGKRNA-AAARDFTWVQALGIRF---GGHRLYLGVRRT 174
HGR+DADFC++SD +LHINAHFIGKR A +RDFTW+QA+ + F G HRLY+G R+T
Sbjct: 135 HGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKT 194
Query: 175 VRWD 178
WD
Sbjct: 195 AAWD 198
>Os01g0968200 Root cap family protein
Length = 208
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 82/119 (68%), Gaps = 4/119 (3%)
Query: 77 RGCRDMCYVHCPTCKLVCLCELT-GTECYDPRFVGGDGNKFLFHGRKDADFCLLSDANLH 135
+GC C CP + + LC+ G C DPRF GGDGN F FHG+KD DFC++SDA+LH
Sbjct: 60 KGCMAKCDKRCPN-QCMHLCDFYPGVSCGDPRFTGGDGNNFYFHGKKDHDFCIVSDADLH 118
Query: 136 INAHFIGKRNAAAARDFTWVQALGIRFGGHRLYLGVRRTVRW--DAAVDRLVITFDGAP 192
INAHFIGKRN +RDFTW+QALGIRF HRLY+G +T +W D +V + DGAP
Sbjct: 119 INAHFIGKRNPTMSRDFTWIQALGIRFADHRLYIGALKTAKWNSDLSVSASMPVMDGAP 177
>Os05g0552600 Root cap family protein
Length = 425
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 96 CELTGTECYDPRFVGGDGNKFLFHGRKDADFCLLSDANLHINAHFIGKRNAAAARDFTWV 155
C L G C DPRF+GGDGN F FHGR+D DFCLLSDANLHIN HF+G RD TWV
Sbjct: 247 CNLPGAVCQDPRFIGGDGNTFYFHGRRDRDFCLLSDANLHINGHFVGNHVPGLKRDPTWV 306
Query: 156 QALGIRF-GGHRLYLGVRRTVRWDAAVDRLVITFDGAPVELD 196
QA+ ++F GGHRLY+G RRT WD DRL + FDG V+L
Sbjct: 307 QAIAVQFSGGHRLYVGARRTAVWDDDSDRLAVVFDGETVQLQ 348
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,712,256
Number of extensions: 556587
Number of successful extensions: 1192
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1179
Number of HSP's successfully gapped: 7
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)