BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0129100 Os11g0129100|Os11g0129100
(112 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0129100 Hypothetical protein 230 1e-61
Os12g0126000 Multi antimicrobial extrusion protein MatE fam... 211 9e-56
Os11g0126100 Multi antimicrobial extrusion protein MatE fam... 144 2e-35
Os12g0125900 Multi antimicrobial extrusion protein MatE fam... 136 4e-33
Os03g0188000 Conserved hypothetical protein 74 3e-14
Os08g0480000 Multi antimicrobial extrusion protein MatE fam... 72 1e-13
>Os11g0129100 Hypothetical protein
Length = 112
Score = 230 bits (587), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MERPGDEHDDCRTVPLLEPKHAHGEGSNNKQEEDEEEVGSLGRRVLVESKKLWVVAGPSI 60
MERPGDEHDDCRTVPLLEPKHAHGEGSNNKQEEDEEEVGSLGRRVLVESKKLWVVAGPSI
Sbjct: 1 MERPGDEHDDCRTVPLLEPKHAHGEGSNNKQEEDEEEVGSLGRRVLVESKKLWVVAGPSI 60
Query: 61 CARFSTFGVTVISQAFIGHVGATELAGYALVSTVLMRFSGGILVTILSTHYT 112
CARFSTFGVTVISQAFIGHVGATELAGYALVSTVLMRFSGGILVTILSTHYT
Sbjct: 61 CARFSTFGVTVISQAFIGHVGATELAGYALVSTVLMRFSGGILVTILSTHYT 112
>Os12g0126000 Multi antimicrobial extrusion protein MatE family protein
Length = 507
Score = 211 bits (537), Expect = 9e-56, Method: Composition-based stats.
Identities = 101/109 (92%), Positives = 104/109 (95%), Gaps = 1/109 (0%)
Query: 1 MERPGDEHDDCRTVPLLEPKHAHGEGSNN-KQEEDEEEVGSLGRRVLVESKKLWVVAGPS 59
MERPGDEHDDCRT PLLEPKHAHGEGSNN KQEEDEEEVGSLG RVLVESKKLWVVAGPS
Sbjct: 1 MERPGDEHDDCRTAPLLEPKHAHGEGSNNDKQEEDEEEVGSLGPRVLVESKKLWVVAGPS 60
Query: 60 ICARFSTFGVTVISQAFIGHVGATELAGYALVSTVLMRFSGGILVTILS 108
ICARFSTFGVTVISQAFIGH+GATELAGYALVSTVLMRFSGGIL+ + S
Sbjct: 61 ICARFSTFGVTVISQAFIGHIGATELAGYALVSTVLMRFSGGILLGMAS 109
>Os11g0126100 Multi antimicrobial extrusion protein MatE family protein
Length = 497
Score = 144 bits (362), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/108 (70%), Positives = 85/108 (78%), Gaps = 9/108 (8%)
Query: 1 MERPGDEHDDCRTVPLLEPKHAHGEGSNNKQEEDEEEVGSLGRRVLVESKKLWVVAGPSI 60
MER E D+ TVPLLEPK A E+EEEVGS+ RRV+ E+KKLWVVAGPSI
Sbjct: 1 MERT-TEDDERPTVPLLEPKPA--------SNEEEEEVGSVRRRVVEENKKLWVVAGPSI 51
Query: 61 CARFSTFGVTVISQAFIGHVGATELAGYALVSTVLMRFSGGILVTILS 108
CARFS+FGVTVISQAFIGH+GATELA YALVSTVLMRFS GIL+ + S
Sbjct: 52 CARFSSFGVTVISQAFIGHIGATELAAYALVSTVLMRFSNGILLGMAS 99
>Os12g0125900 Multi antimicrobial extrusion protein MatE family protein
Length = 213
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 86/104 (82%), Gaps = 3/104 (2%)
Query: 1 MERPGDEHDDCRTVPLLEPKHAHGEGSNNKQEEDEEEVGSLGRRVLVESKKLWVVAGPSI 60
ME+PGD D+ TVPLLEPK A + + +E+EVGS+ RRV+ E+KKLWVVAGPSI
Sbjct: 1 MEKPGD--DEKLTVPLLEPKPATYK-HQEDDDAEEDEVGSVRRRVVEENKKLWVVAGPSI 57
Query: 61 CARFSTFGVTVISQAFIGHVGATELAGYALVSTVLMRFSGGILV 104
CARFS+FGVTVISQAFIGH+GATELA YALVSTVLMRFS GIL+
Sbjct: 58 CARFSSFGVTVISQAFIGHIGATELAAYALVSTVLMRFSNGILL 101
>Os03g0188000 Conserved hypothetical protein
Length = 109
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 5 GDEHDDCRTVPLLEPKHAHGEGSNNKQEEDEEEVGSLGRRVLVESKKLWVVAGPSICARF 64
GDE ++CR V LL A EG D G L RRV ES+KLWV+ P+I +R
Sbjct: 6 GDE-EECR-VALLNGGGAAKEGWQVVSGGD----GKLRRRVWEESRKLWVIVAPAIFSRV 59
Query: 65 STFGVTVISQAFIGHVGATELAGYALVSTVLMRFSGGILVTILSTHY 111
T+ + VI+QAF GH+G ELA ++ +TV++ F+ G++V L+T +
Sbjct: 60 VTYSMNVITQAFAGHLGDLELAAISIANTVVVGFNFGLMVGRLNTSF 106
>Os08g0480000 Multi antimicrobial extrusion protein MatE family protein
Length = 489
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 15 PLLEPKHAHGEGSNNKQEEDEEEVGSLGRRVL----VESKKLWVVAGPSICARFSTFGVT 70
PLL P+ E ++++ G RV VESKKLW V GP+I R + +G+
Sbjct: 11 PLLRPR------GGVDAEAVKQQLWPAGARVAGEWWVESKKLWRVVGPAIFQRIALYGIN 64
Query: 71 VISQAFIGHVGATELAGYALVSTVLMRFSGGILVTILS 108
V+SQAFIGH+G ELA +++ STV+ F+ G L+ + S
Sbjct: 65 VVSQAFIGHMGDLELAAFSIASTVVAGFNFGFLLGMAS 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,164,005
Number of extensions: 160147
Number of successful extensions: 681
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 6
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)