Os12g0126000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os12g0126000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.78 | 0.63 | 9.62 | -2.22 | 2.02 | -2.07 | 1.27 | -0.731 | -0.274 | 11.1 | 71.01 | 1188 | -- | -- |
| 180.73 | 0.626 | 9.63 | -2.32 | 2 | -2.09 | 1.14 | -- | -0.304 | 11.1 | 71.05 | 1195 | -- | -- |
| 186.06 | 0.635 | 9.63 | -2.25 | 2 | -2.07 | -- | -0.197 | -0.29 | 11.1 | 71 | 1194 | -- | -- |
| 186.12 | 0.635 | 9.63 | -2.27 | 1.99 | -2.07 | -- | -- | -0.298 | 11.1 | 71 | 1197 | -- | -- |
| 334.3 | 0.852 | 9.68 | -2.2 | -- | -1.92 | -- | -0.349 | -0.244 | -- | 72 | 1527 | -- | -- |
| 328.41 | 0.85 | 9.58 | -1.9 | 1.5 | -- | 0.798 | -- | -0.0117 | 10.6 | -- | -- | -- | -- |
| 331.04 | 0.852 | 9.58 | -1.86 | 1.5 | -- | -- | -- | -0.00911 | 10.6 | -- | -- | -- | -- |
| 334.44 | 0.852 | 9.67 | -2.23 | -- | -1.99 | -- | -- | -0.253 | -- | 72 | 1530 | -- | -- |
| 318.85 | 0.832 | 9.6 | -- | 1.81 | -1.75 | -- | -- | -0.0482 | 11.2 | 73 | 1222 | -- | -- |
| 469.05 | 1.01 | 9.61 | -1.89 | -- | -- | -- | -- | -0.0167 | -- | -- | -- | -- | -- |
| 422.52 | 0.962 | 9.53 | -- | 1.51 | -- | -- | -- | 0.198 | 10.7 | -- | -- | -- | -- |
| 457.71 | 0.996 | 9.63 | -- | -- | -1.79 | -- | -- | -0.0216 | -- | 75 | 1541 | -- | -- |
| 563.41 | 1.11 | 9.57 | -- | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.87 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 2 | 188.40 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |
| 7 | 190.45 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 9 | 191.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 16 | 192.56 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 18 | 192.77 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 20 | 193.17 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 36 | 194.05 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 38 | 194.09 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 63 | 195.22 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 78 | 195.74 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 81 | 195.86 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 94 | 196.23 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 96 | 196.34 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 115 | 196.63 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 116 | 196.69 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 179 | 197.41 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 226 | 198.13 | humidity | 90 | 1440 | < th | dose dependent | sin | 20 | NA |
| 236 | 198.26 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 314 | 199.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 458 | 200.79 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 485 | 200.86 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 544 | 201.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 562 | 201.35 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 620 | 201.86 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 661 | 202.25 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 672 | 202.30 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 696 | 202.37 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 958 | 204.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 962 | 204.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 971 | 204.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 994 | 205.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 20 |