Os11g0126100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os11g0126100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 508.51 | 1.06 | 10.8 | -3.07 | 4.73 | 3.8 | 5.88 | 2.45 | -0.314 | 8.79 | 85.5 | 910 | -- | -- |
| 514.64 | 1.06 | 10.8 | -3.22 | 4.73 | 3.96 | 5.12 | -- | -0.328 | 8.81 | 85 | 918 | -- | -- |
| 596.97 | 1.14 | 10.8 | -3.17 | 4.73 | 4.03 | -- | -1.66 | -0.389 | 8.88 | 86 | 927 | -- | -- |
| 601.32 | 1.14 | 10.8 | -3.02 | 4.61 | 3.84 | -- | -- | -0.339 | 8.88 | 85.52 | 940 | -- | -- |
| 1273.93 | 1.66 | 11 | -2.99 | -- | 2.95 | -- | -1.17 | -0.576 | -- | 120.9 | 1431 | -- | -- |
| 779.66 | 1.31 | 10.9 | -2.75 | 3.38 | -- | 4.61 | -- | -0.431 | 8.41 | -- | -- | -- | -- |
| 846.72 | 1.36 | 10.9 | -2.61 | 3.37 | -- | -- | -- | -0.433 | 8.4 | -- | -- | -- | -- |
| 1246.97 | 1.64 | 10.9 | -3.08 | -- | 3.48 | -- | -- | -0.277 | -- | 84.92 | 1434 | -- | -- |
| 830.03 | 1.34 | 10.8 | -- | 4.62 | 3.76 | -- | -- | -0.198 | 8.91 | 140.1 | 918 | -- | -- |
| 1478.56 | 1.8 | 11 | -2.59 | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
| 1026.67 | 1.5 | 10.8 | -- | 3.36 | -- | -- | -- | -0.142 | 8.45 | -- | -- | -- | -- |
| 1468.35 | 1.78 | 10.9 | -- | -- | 2.73 | -- | -- | -0.204 | -- | 139.4 | 1449 | -- | -- |
| 1656.12 | 1.9 | 10.9 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 510.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 5 | 517.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 7 | 518.07 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 9 | 518.50 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 15 | 519.63 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 76 | 527.21 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 11 |
| 79 | 527.41 | humidity | 90 | 720 | < th | dose dependent | sin | 18 | NA |
| 87 | 528.18 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 113 | 530.92 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 114 | 530.97 | humidity | 70 | 720 | > th | dose independent | sin | 17 | NA |
| 145 | 532.46 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 5 |
| 163 | 533.16 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 172 | 533.53 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 181 | 533.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 234 | 536.18 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 251 | 536.60 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 19 |
| 254 | 536.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 307 | 538.23 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 317 | 538.50 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 334 | 538.88 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 371 | 539.74 | humidity | 70 | 720 | < th | dose independent | sin | 16 | NA |
| 395 | 540.17 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 400 | 540.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 424 | 540.57 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 425 | 540.57 | humidity | 80 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 469 | 541.51 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 515 | 542.11 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 4 |
| 528 | 542.31 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 11 |
| 530 | 542.33 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 610 | 543.42 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 733 | 544.83 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 768 | 545.30 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 808 | 545.82 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 15 |