Os08g0480000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os08g0480000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.27 | 0.722 | 6.32 | 1.16 | 2.34 | 4.69 | 0.885 | -1.56 | 0.471 | 8.28 | 28.64 | 322 | -- | -- |
| 239.41 | 0.721 | 6.35 | 0.961 | 2.33 | 4.81 | 0.9 | -- | 0.464 | 8.23 | 28.35 | 327 | -- | -- |
| 238.51 | 0.719 | 6.33 | 1.15 | 2.33 | 4.73 | -- | -1.34 | 0.459 | 8.35 | 28.83 | 320 | -- | -- |
| 240.48 | 0.722 | 6.36 | 0.932 | 2.34 | 4.76 | -- | -- | 0.408 | 8.34 | 28.62 | 320 | -- | -- |
| 415.18 | 0.949 | 6.37 | 1.43 | -- | 6.77 | -- | -1.08 | 0.525 | -- | 32.85 | 509 | -- | -- |
| 543.48 | 1.09 | 6.56 | -0.33 | 3.34 | -- | 1.2 | -- | -0.609 | 7.13 | -- | -- | -- | -- |
| 547.27 | 1.1 | 6.56 | -0.306 | 3.34 | -- | -- | -- | -0.612 | 7.14 | -- | -- | -- | -- |
| 418.6 | 0.953 | 6.4 | 1.32 | -- | 6.76 | -- | -- | 0.516 | -- | 32.42 | 504 | -- | -- |
| 260.13 | 0.751 | 6.39 | -- | 2.46 | 4.39 | -- | -- | 0.256 | 8.29 | 28.57 | 294 | -- | -- |
| 1137.39 | 1.58 | 6.64 | -0.243 | -- | -- | -- | -- | -0.552 | -- | -- | -- | -- | -- |
| 549.73 | 1.1 | 6.56 | -- | 3.34 | -- | -- | -- | -0.578 | 7.15 | -- | -- | -- | -- |
| 459.89 | 0.999 | 6.45 | -- | -- | 6.35 | -- | -- | 0.27 | -- | 33.26 | 491 | -- | -- |
| 1138.94 | 1.58 | 6.63 | -- | -- | -- | -- | -- | -0.526 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 232.90 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 233.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 4 | 233.70 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 13 | 234.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 20 | 234.38 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 25 | 234.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 39 | 234.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 81 | 235.29 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 101 | 235.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 106 | 235.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 107 | 235.63 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 290 | 237.99 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 387 | 238.92 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 530 | 240.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 572 | 240.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 573 | 240.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 739 | 241.92 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |