Os11g0129100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0129100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.3 | 0.584 | 9.05 | -3.13 | 1.95 | 2.91 | 1.45 | -3.73 | 0.176 | 11.9 | 26.44 | 945 | 15.3 | 15.6 |
| 154.83 | 0.58 | 9.01 | -2.56 | 2.01 | 2.6 | 1.75 | -- | 0.156 | 12 | 26.01 | 981 | 14.7 | 15.2 |
| 162.05 | 0.593 | 9.06 | -3.1 | 1.96 | 2.88 | -- | -3.65 | 0.133 | 11.9 | 26.07 | 956 | 15.1 | 15.4 |
| 166.03 | 0.6 | 9 | -2.47 | 1.97 | 2.51 | -- | -- | 0.142 | 11.9 | 25.94 | 980 | 14.7 | 15.5 |
| 330.33 | 0.846 | 9.07 | -3.11 | -- | 2.27 | -- | -3.01 | 0.187 | -- | 26.6 | 1427 | 15.3 | 16.6 |
| 380.78 | 0.915 | 9.01 | -1.93 | 1.39 | -- | 1.02 | -- | 0.111 | 10.7 | -- | -- | -- | -- |
| 385.12 | 0.919 | 9.01 | -1.88 | 1.38 | -- | -- | -- | 0.115 | 10.7 | -- | -- | -- | -- |
| 333.49 | 0.851 | 9.02 | -2.45 | -- | 1.95 | -- | -- | 0.218 | -- | 26.6 | 1422 | 15.3 | 16 |
| 318.47 | 0.831 | 8.97 | -- | 1.98 | 2.42 | -- | -- | 0.344 | 12.2 | 25.67 | 910 | 15.8 | 14.4 |
| 503.08 | 1.05 | 9.05 | -1.91 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 478.72 | 1.02 | 8.96 | -- | 1.4 | -- | -- | -- | 0.325 | 10.8 | -- | -- | -- | -- |
| 483.91 | 1.02 | 8.92 | -- | -- | 1.81 | -- | -- | 0.57 | -- | 27 | 1492 | 16.9 | 15 |
| 599.47 | 1.14 | 9 | -- | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 2 | 189.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 5 | 190.07 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 18 | 194.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 22 | 194.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 57 | 196.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 70 | 197.09 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 130 | 198.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 153 | 199.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 166 | 199.58 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 192 | 199.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 197 | 200.01 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 202 | 200.09 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 233 | 200.52 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 235 | 200.56 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 252 | 200.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 282 | 201.08 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 285 | 201.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 293 | 201.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 314 | 201.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 319 | 201.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 516 | 201.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 566 | 201.88 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 578 | 201.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 607 | 202.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 609 | 202.02 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 611 | 202.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 613 | 202.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 618 | 202.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 633 | 202.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 689 | 202.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 776 | 202.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 784 | 202.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 808 | 202.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 823 | 202.98 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 826 | 203.04 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 919 | 203.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 927 | 203.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 941 | 203.34 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |