BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0123500 Os11g0123500|AK070935
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0123500 Snf7 family protein 334 3e-92
Os12g0121400 Snf7 family protein 320 4e-88
Os06g0608500 Snf7 family protein 196 1e-50
Os09g0267600 Snf7 family protein 169 1e-42
Os07g0490700 Snf7 family protein 69 4e-12
>Os11g0123500 Snf7 family protein
Length = 216
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/195 (87%), Positives = 170/195 (87%)
Query: 22 PTLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQL 81
PTLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQL
Sbjct: 22 PTLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQL 81
Query: 82 ANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENM 141
ANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENM
Sbjct: 82 ANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENM 141
Query: 142 RQIQEALATPIGASAXXXXXXXXXXXXXXXXXXXXXXXXXPPQSTRMEPSARVTTSSQPA 201
RQIQEALATPIGASA PPQSTRMEPSARVTTSSQPA
Sbjct: 142 RQIQEALATPIGASADFDEDELEAELEDLEEEELDHELPEPPQSTRMEPSARVTTSSQPA 201
Query: 202 NDLAELTKLQAEMAL 216
NDLAELTKLQAEMAL
Sbjct: 202 NDLAELTKLQAEMAL 216
>Os12g0121400 Snf7 family protein
Length = 216
Score = 320 bits (820), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/195 (84%), Positives = 167/195 (85%), Gaps = 1/195 (0%)
Query: 22 PTLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQL 81
PTLDRLHETLEMLEKKECFLQKKASAEVE+AKDYTKAKNKSAAIQCLKKKKLYETQIEQL
Sbjct: 23 PTLDRLHETLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQL 82
Query: 82 ANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENM 141
ANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENM
Sbjct: 83 ANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENM 142
Query: 142 RQIQEALATPIGASAXXXXXXXXXXXXXXXXXXXXXXXXXPPQSTRMEPSARVTTSSQPA 201
RQIQEALATPIGASA PPQ T MEPSARVTT +QPA
Sbjct: 143 RQIQEALATPIGASADFDEDELEAELEDLEEEELENDLPEPPQRTSMEPSARVTT-TQPA 201
Query: 202 NDLAELTKLQAEMAL 216
NDLAELTKLQAEMAL
Sbjct: 202 NDLAELTKLQAEMAL 216
>Os06g0608500 Snf7 family protein
Length = 220
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/134 (67%), Positives = 117/134 (87%)
Query: 23 TLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQLA 82
++D+L ETLEMLEKKE L KKA+ EVEKAK +TKAKNK AAIQCLK+K+LYE QIEQL
Sbjct: 23 SIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRAAIQCLKRKRLYEQQIEQLG 82
Query: 83 NFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENMR 142
NFQLR+HDQ+IMLE AKATT+TVDALR+G+SA+KA+H++ +IDD++ ++E N++ ENMR
Sbjct: 83 NFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDVDKTMDEINDNMENMR 142
Query: 143 QIQEALATPIGASA 156
QIQ+ L+ PIGA+A
Sbjct: 143 QIQDLLSAPIGAAA 156
>Os09g0267600 Snf7 family protein
Length = 220
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 138/201 (68%), Gaps = 7/201 (3%)
Query: 23 TLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQLA 82
TLD+L+ETL+MLEKKE L+KKA+AE+E+AK+++KAKNK AAIQ LK+KKLYE QIEQL
Sbjct: 20 TLDKLNETLDMLEKKEKVLEKKAAAELERAKEFSKAKNKRAAIQSLKRKKLYEQQIEQLG 79
Query: 83 NFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENMR 142
NFQLR+HDQ+IMLE+AKATT+TVDALR+G++A+KA+ ++ +IDD++ ++E NE TENM+
Sbjct: 80 NFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTENMK 139
Query: 143 QIQEALATPIGASAXXXXXXXXXXXXXXXXXXXXXX----XXXPPQSTRMEPSARVTTSS 198
QIQ+AL+ P+GASA PP P R+ T
Sbjct: 140 QIQDALSAPLGASADFDEDELEAELEELEGAELESQLLEPVAAPPVHPVQVPGTRIPTRP 199
Query: 199 QPANDLA---ELTKLQAEMAL 216
P A EL LQAEMAL
Sbjct: 200 APQKASAEEDELAALQAEMAL 220
>Os07g0490700 Snf7 family protein
Length = 97
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 49/65 (75%)
Query: 25 DRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQLANF 84
D+L + ++ KE LQKK S E+E+AK++TK+ NK AA+QCLK+KK YE+Q+ Q+ +
Sbjct: 17 DQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCLKRKKYYESQMNQVGSV 76
Query: 85 QLRVH 89
QLR++
Sbjct: 77 QLRIN 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.120 0.310
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,312,046
Number of extensions: 120922
Number of successful extensions: 498
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 6
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 154 (63.9 bits)