Os12g0121400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os12g0121400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.62 | 0.314 | 11.3 | -1.97 | 0.0462 | 1.23 | 1.92 | -1.33 | -0.109 | 23.9 | 0.1779 | 757 | -- | -- |
| 44.96 | 0.312 | 11.3 | -1.92 | 0.0241 | 1.33 | 2.2 | -- | -0.0978 | 1.66 | 0.18 | 777 | -- | -- |
| 55.29 | 0.349 | 11.3 | -1.9 | 0.932 | 0.0814 | -- | -1.48 | -0.0651 | 18.5 | 0.1779 | 757 | -- | -- |
| 63 | 0.37 | 11.3 | -2.01 | 0.0363 | 1.28 | -- | -- | -0.105 | 3.3 | 0.1789 | 772 | -- | -- |
| 61.23 | 0.364 | 11.3 | -1.89 | -- | 1.19 | -- | -1.66 | -0.0852 | -- | 0.4587 | 728 | -- | -- |
| 67.5 | 0.385 | 11.3 | -1.87 | 0.895 | -- | -1.26 | -- | -0.051 | 17.4 | -- | -- | -- | -- |
| 69.48 | 0.39 | 11.3 | -1.87 | 0.91 | -- | -- | -- | -0.0583 | 18.1 | -- | -- | -- | -- |
| 62.97 | 0.37 | 11.3 | -1.99 | -- | 1.28 | -- | -- | -0.11 | -- | 0.1782 | 783 | -- | -- |
| 161.37 | 0.595 | 11.2 | -- | 0.931 | -0.104 | -- | -- | 0.154 | 17.5 | 1.49 | 834 | -- | -- |
| 112.45 | 0.495 | 11.2 | -1.9 | -- | -- | -- | -- | -0.0786 | -- | -- | -- | -- | -- |
| 161.65 | 0.595 | 11.2 | -- | 0.938 | -- | -- | -- | 0.15 | 18 | -- | -- | -- | -- |
| 165.27 | 0.599 | 11.2 | -- | -- | 1.11 | -- | -- | 0.14 | -- | 1.44 | 727 | -- | -- |
| 207.24 | 0.672 | 11.2 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 6 | 42.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 11 | 42.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 12 | 42.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 15 | 43.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 23 | 43.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 38 | 43.53 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 4 |
| 43 | 43.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 45 | 43.63 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 47 | 43.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 48 | 43.64 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 55 | 43.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 86 | 44.09 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 130 | 44.56 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 132 | 44.59 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 151 | 44.76 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 152 | 44.76 | temperature | 10 | 270 | > th | dose dependent | sin | 14 | NA |
| 158 | 44.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 177 | 44.90 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 192 | 44.97 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 219 | 45.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 239 | 45.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 247 | 45.28 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 250 | 45.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 260 | 45.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 277 | 45.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 290 | 45.43 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 308 | 45.49 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 15 |
| 313 | 45.50 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 5 |
| 331 | 45.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 342 | 45.57 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 421 | 45.84 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 433 | 45.87 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 22 |
| 449 | 45.91 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 18 |
| 450 | 45.91 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 20 |
| 461 | 45.93 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 22 |
| 531 | 46.13 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 536 | 46.14 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 13 |
| 556 | 46.16 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 583 | 46.22 | radiation | 1 | 720 | < th | dose dependent | sin | 11 | NA |
| 600 | 46.28 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 21 |
| 629 | 46.35 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 649 | 46.36 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 663 | 46.39 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 5 |
| 683 | 46.45 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 684 | 46.45 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 7 |
| 742 | 46.45 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 23 |
| 745 | 46.46 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 746 | 46.46 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 792 | 46.54 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 9 |
| 839 | 46.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 888 | 46.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 901 | 46.78 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 14 |
| 998 | 46.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 11 |