BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0121400 Os12g0121400|J023022E05
(216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19830.1 | chr2:8558101-8559389 REVERSE LENGTH=214 195 2e-50
AT4G29160.1 | chr4:14381019-14382342 FORWARD LENGTH=220 188 2e-48
AT5G09260.1 | chr5:2876797-2878355 FORWARD LENGTH=217 50 1e-06
AT5G63880.2 | chr5:25563890-25565258 FORWARD LENGTH=244 47 5e-06
>AT2G19830.1 | chr2:8558101-8559389 REVERSE LENGTH=214
Length = 213
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 117/133 (87%)
Query: 24 TLDRLHETLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQLA 83
TLD+L+ETLEMLEKKE L KKA+ EVE+AK++++AKNK AAIQCLK+K+LYE Q+EQL
Sbjct: 19 TLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLG 78
Query: 84 NFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENMR 143
NFQLR+HDQ+IMLE AKATT+TVDALR+G+SA+KA+ ++ +IDD++ ++E NE TENM+
Sbjct: 79 NFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMK 138
Query: 144 QIQEALATPIGAS 156
QIQEAL+ P GA+
Sbjct: 139 QIQEALSAPFGAN 151
>AT4G29160.1 | chr4:14381019-14382342 FORWARD LENGTH=220
Length = 219
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 137/202 (67%), Gaps = 9/202 (4%)
Query: 24 TLDRLHETLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQLA 83
TLD+L+ETLEMLEKKE L KKA AEVE+AK+Y++AKNK AAIQCLK+K+LYE Q+EQL
Sbjct: 18 TLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLG 77
Query: 84 NFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENMR 143
NFQLR+HDQ+IMLE AKATT+TVDALRSG+SA+KA+ ++ +IDD++ ++E NE TENM+
Sbjct: 78 NFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMK 137
Query: 144 QIQEALATPIGASAXXXXXXXXXXXXXXXXXXXXXXXXXPPQRTSMEPSARVTTT-QPAN 202
QIQEALATP+GA+A P PS V QPA
Sbjct: 138 QIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATTAPPLPSVPVPAGRQPAR 197
Query: 203 DLA--------ELTKLQAEMAL 216
+ EL LQAEMAL
Sbjct: 198 PVPQKRTAEEEELAALQAEMAL 219
>AT5G09260.1 | chr5:2876797-2878355 FORWARD LENGTH=217
Length = 216
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%)
Query: 42 LQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQLANFQLRVHDQIIMLESAKA 101
L+K AE + A+D + K K A+ LKKK+ E ++Q+ + + V Q+ +E
Sbjct: 35 LEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIELTSK 94
Query: 102 TTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANE 137
++L+ G++A+KAI V++DD++ +++ E
Sbjct: 95 QKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAE 130
>AT5G63880.2 | chr5:25563890-25565258 FORWARD LENGTH=244
Length = 243
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 42 LQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQLANFQLRVHDQIIMLESAKA 101
L+K AE + A+D + K K A+ L+KK+ E ++Q+ + + V Q+ +E
Sbjct: 35 LEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIELTSK 94
Query: 102 TTDTVDALRSGSSAVKAIHQSVSIDDIENAIEE-----ANEHTENMRQI 145
++L+ G+SA+KAI + +DD++ +++ A + EN+ +
Sbjct: 95 QKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDCENLYNL 143
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.121 0.314
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,824,975
Number of extensions: 83024
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 6
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)