Os06g0608500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os06g0608500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.77 | 0.168 | 11.4 | -0.0259 | 0.194 | -0.339 | -0.4 | -1.34 | -0.188 | 2.55 | 21.03 | 1429 | -- | -- |
| 14.99 | 0.18 | 11.4 | 0.291 | 0.191 | -0.251 | -0.417 | -- | -0.0768 | 2.29 | 24.1 | 1704 | -- | -- |
| 13.27 | 0.17 | 11.4 | -0.0211 | 0.192 | -0.345 | -- | -1.4 | -0.192 | 2.5 | 20.8 | 1378 | -- | -- |
| 15.64 | 0.184 | 11.4 | 0.3 | 0.19 | -0.25 | -- | -- | -0.0761 | 2.43 | 24.1 | 1701 | -- | -- |
| 15.5 | 0.183 | 11.4 | -0.0169 | -- | -0.335 | -- | -1.4 | -0.185 | -- | 20.91 | 1406 | -- | -- |
| 17.58 | 0.197 | 11.4 | 0.185 | 0.19 | -- | -0.43 | -- | -0.176 | 2.55 | -- | -- | -- | -- |
| 18.24 | 0.2 | 11.4 | 0.197 | 0.189 | -- | -- | -- | -0.174 | 2.62 | -- | -- | -- | -- |
| 17.24 | 0.194 | 11.4 | 0.289 | -- | -0.2 | -- | -- | -0.0845 | -- | 23.7 | 3169 | -- | -- |
| 17.97 | 0.197 | 11.4 | -- | 0.193 | -0.202 | -- | -- | -0.125 | 2.09 | 24.11 | 1975 | -- | -- |
| 20.34 | 0.211 | 11.4 | 0.205 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 19.26 | 0.205 | 11.4 | -- | 0.193 | -- | -- | -- | -0.196 | 2.63 | -- | -- | -- | -- |
| 19.31 | 0.205 | 11.4 | -- | -- | -0.161 | -- | -- | -0.131 | -- | 23.7 | 3169 | -- | -- |
| 21.44 | 0.216 | 11.4 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 2 | 12.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 12.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 5 | 12.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 7 | 12.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 8 | 12.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 11 | 12.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 13 | 12.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 19 | 12.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 29 | 12.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 31 | 12.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 63 | 13.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 86 | 13.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 97 | 13.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 145 | 13.08 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 221 | 13.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 284 | 13.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 347 | 13.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 348 | 13.18 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 392 | 13.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 394 | 13.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 398 | 13.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 453 | 13.21 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 544 | 13.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 616 | 13.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 621 | 13.27 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 641 | 13.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 652 | 13.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 689 | 13.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 719 | 13.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 723 | 13.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 757 | 13.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 759 | 13.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 867 | 13.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 927 | 13.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 934 | 13.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 959 | 13.37 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 960 | 13.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 4 |